YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	wht-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQVCAYVQQ DDCFIGSLTV EEHLKFMAKL KMGSEYDLNE QERRVKSVMR SLGLEKIADS  60
   61 IIGTRTRKGI SGGEKKRLAF ASEILTSPPI LICDEPTSGL DSFLAYQVVC VLKKLAETRN 120
  121 MTILLTIHQP SSQVFQLFDR ILFLESFPKL RKSSDKHSIY MMVNGDVAFC GSQSGAEKMW 180
  181 SEMKLPIPMN FNPSDHYLAT MSIRDQAEET LKKNQIGKIC TTFKYSELGK SVFKESSGRE 240
  241 VDERDRAFSE DWRRRYATTF GRPRFGASFF QQIRALTWRA SKTVLREPTL LKVQTFQSII 300
  301 IAILTGLVYT NNSPVDQQKI MNINGSLYQM ISNMAFMFQF SVVHHFCLEM NTFYRETSSR 360
  361 LYRVSAYFIS KNLAELPSYI VSAVIFTSIL YWMSGLVPII DSFLIYMLVG ILVQNIAISI 420
  421 GYMFSCIFGT VNLAVAVMPI FVVPMMAFGG FFINQDTLQW YFVPMKYLSY FGYGYEAVAI 480
  481 AQWTHVEEIP GCSSSLAHCS RNGTDVLNSM SFKPSNFWVD ISVMAFMIFV FRFLAFMALY 540
  541 VRVKRRS

Type	Start	End	Confidence
Cytoplasmic	1	288	0.74
Transmembrane Helix	289	309	0.70
Non-Cytoplasmic	310	326	0.80
Transmembrane Helix	327	348	0.78
Cytoplasmic	349	372	0.75
Transmembrane Helix	373	394	0.83
Non-Cytoplasmic	395	402	0.65
Transmembrane Helix	403	424	0.88
Cytoplasmic	425	430	0.65
Transmembrane Helix	431	453	0.89
Non-Cytoplasmic	454	516	0.95
Transmembrane Helix	517	541	0.85
Cytoplasmic	542	547	0.92