YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lat-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISGQVGRL SGGLASALDV VSTIGCAISI VCLALSVCVF TFFRNLQNVR NSIHRNLCLC  60
   61 LLIAELVFVI GMDRTGNRTG CGVVAILLHY FFLSSFCWML LEGYQLYMML IQVFEPNRTR 120
  121 IFLYYLFCYG TPAVVVAISA GIKWEDYGTD SYCWIDTSTP TIWAFVAPII VIIAANIIFL 180
  181 LIALKVVLSV QSRDRTKWGR IIGWLKGSAT LLCLLGITWI FGFLTAVKGG TGTAFAWIFT 240
  241 ILNCTQGIFI FVLHVVLNEK VRASIVRWLR TGICCLPETS SAAYNSRSFL SSRQRILNMI 300
  301 KVNGHSYPST ASTDDKEKQL TPITKTTDWL SRLPNQDSVS IPESNFNNLN GTLENSNLNS 360
  361 AEIKEEDEIP ELRRRVTVDL NPMIVSNNEI ERMSHASSDP RGSQIIEVTA VEKKAPVKRI 420
  421 KFPLGAKQSE RGSQHRTKAK VIAPPESPVS ESGSKDYRF

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.93
Transmembrane Helix	20	43	0.93
Cytoplasmic	44	52	0.89
Transmembrane Helix	53	72	0.93
Non-Cytoplasmic	73	80	0.81
Transmembrane Helix	81	101	0.89
Cytoplasmic	102	120	0.87
Transmembrane Helix	121	142	0.95
Non-Cytoplasmic	143	161	0.94
Transmembrane Helix	162	184	0.92
Cytoplasmic	185	201	0.89
Transmembrane Helix	202	226	0.87
Non-Cytoplasmic	227	233	0.88
Transmembrane Helix	234	257	0.93
Cytoplasmic	258	459	0.54