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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|124245108, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQSWILTC FCLLSSGTSA VFLKGNFSRS YPCDEKRHNA LVTAECNHRQ LHEVPQTIGK  60
   61 YVTDVDLSDN TIMHITNESF QKFRNLTKIN LNHNAKQQHP NENKNGMNIT EGAFLSLRNL 120
  121 TELLLEDNQL YTIPAGLPES LKELSLIQNN IFQVTKNNTF GLRNLERLYL GWNCYFKCNQ 180
  181 IFKVEDGAFN NLINLKLLSL SFNNLFSVPP KLPSSLSKLF LSNAKISTIT QEDFKGLEHL 240
  241 ILLDLSGNCP RCFNAPFPCE SCNLSASIRI HPLAFQNLTQ LRFLNLSSTS LRTIPSTWFD 300
  301 NLTNLKELHL EFNYLVQEIA SGAFLTKLPS LQTLDLSFNF IHKEYLQYIT ISPNFSMLRS 360
  361 LRKLHLKGYV FRELKKEHFK PLQNLPNLTT INLGINFIEK IDFKAFQDFP NLKVIYLSGN 420
  421 RIASVIDGTD HSSWRNRLRK PLSTDYDEFD PHMNFYHSTE PLIKPQCTTY GKALDLSLNN 480
  481 IFVIGKSQFE GFQDIACLNL SFNANGQVLN GTEFSSMPHI KYLDLTNNRL DFDDNQTFSD 540
  541 LHDLEVLDLS HNAHYFSIAG VTHRLGFIQN LIKLKVLNLS HNGIYTLTDE YKLQSKSLKE 600
  601 LVFSGNRLDR LWNANDGKYW SIFTSLETLT RLDLSYNNLQ QIPNEAFLNL PQSLQELHIN 660
  661 DNRLRFFNWT LLQYFPHLHV LDLGRNELYF LTNCLSKFTH SLKTLLLNHN HFSHLPAGFL 720
  721 SEARNLVYLD LSFNTIKMIN KSSLQTETKT NLSVLDLQGN HFDCTCDISD FRSWLEENPH 780
  781 VRIPRLVDVI CSNPGDQRWK SVMSLDLTTC VSDTTAAILF FFTFLTTSTV LLAALVHHLF 840
  841 YWDVWFIYHM CSAKLRGYRS SSTSQTFYDA YISYDTKDAS VTDWVINELR YHLEESEDKS 900
  901 VLLCLEERDW DPGLPIIDNL MQSINQSKKT IFVLTKKYAK SWNFKTAFYL ALQRLMDENM 960
  961 DVIIFILLEP VLQYSQYLRL RQRICKSSIL QWPNNPKAEN LFWQSLKNVV LTENDSRYDN1020
 1021 LYIDSIRQY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle