YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGPAT9
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGAELAGKI LSTWLTLVLG FILLPSVFGV SLGISEIYMK ILVKTLEWAT IRIEKGTPKE  60
   61 SILKNSASVG IIQRDESPME KGLSGLRGRD FELSDVFYFS KKGLEAIVED EVTQRFSSEE 120
  121 LVSWNLLTRT NVNFQYISLR LTMVWVLGVI VRYCVLLPLR VTLAFIGISL LVIGTTLVGQ 180
  181 LPDSSLKNWL SELVHLTCCR ICVRALSGTI HYHNKQYRPQ KGGICVANHT SPIDVLILTT 240
  241 DGCYAMVGQV HGGLMGIIQR AMVKACPHVW FERSEMKDRH LVTKRLKEHI ADKKKLPILI 300
  301 FPEGTCINNT SVMMFKKGSF EIGGTIHPVA IKYNPQFGDA FWNSSKYNMV SYLLRMMTSW 360
  361 AIVCDVWYMP PMTREEGEDA VQFANRVKSA IAIQGGLTEL PWDGGLKRAK VKDIFKEEQQ 420
  421 KNYSKMIVGN GSLS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.61
Transmembrane Helix	10	34	0.74
Non-Cytoplasmic	35	135	0.72
Transmembrane Helix	136	156	0.78
Cytoplasmic	157	160	0.65
Transmembrane Helix	161	181	0.87
Non-Cytoplasmic	182	434	0.75