YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29502090, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	103	0.56
Transmembrane Helix	104	123	0.76
Non-Cytoplasmic	124	134	0.47
Transmembrane Helix	135	157	0.87
Cytoplasmic	158	172	0.50
Transmembrane Helix	173	195	0.83
Non-Cytoplasmic	196	201	0.49
Transmembrane Helix	202	223	0.54
Cytoplasmic	224	303	0.79
Transmembrane Helix	304	327	0.84
Non-Cytoplasmic	328	348	0.73
Transmembrane Helix	349	365	0.73
Cytoplasmic	366	453	0.91
Transmembrane Helix	454	475	0.88
Non-Cytoplasmic	476	480	0.68
Transmembrane Helix	481	502	0.88
Cytoplasmic	503	559	0.97
Transmembrane Helix	560	582	0.92
Non-Cytoplasmic	583	588	0.82
Transmembrane Helix	589	609	0.85
Cytoplasmic	610	953	0.98
Transmembrane Helix	954	976	0.93
Non-Cytoplasmic	977	1007	0.94
Transmembrane Helix	1008	1032	0.83
Cytoplasmic	1033	1082	0.94
Transmembrane Helix	1083	1105	0.83
Non-Cytoplasmic	1106	1109	0.75
Transmembrane Helix	1110	1129	0.88
Cytoplasmic	1130	1199	0.83
Transmembrane Helix	1200	1233	0.62
Non-Cytoplasmic	1234	1558	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKNGTCPYW ERDDLSECAR REYIEFKFPL FILLTGMIYA FCKVFRAFYL RGKNHTNEAP  60
   61 EFEEQGNGNH EYARFSVLRL KSAWESRSFC NVNNRSTFDK FKKFIEGAFI VLQLTIHLYI 120
  121 LSSMPMDNKK FFHQGFLVQM FLWILLLVVI TLRLISASQS FRWVLACKRD LWAVSFYSYA 180
  181 SLFTLSILPL RSVFIGKIKD KIMVKYIISE TFIDLALLLL LSTSSIEGTR YSFLVENENK 240
  241 KLPPAPTVFG LLTFSRIDRL IWKAYKHCLG NADIWDLDIN NKSIAILANF EMSSKKGRLL 300
  301 PNIICYFKAV FISQLFLAFV SSFLNFVPSL LMPRILSYVN DPKSKSWNLV SLYVSSMLVS 360
  361 KIIATTCRGQ GLFLGEKGTM QLRTVLISNI YSKTLRRTIL KDSTTSLQKN ASTSFEENPD 420
  421 SSEAEPRKKS SRKDNSVNNV MSIDAFKVSE AMNTFYLACE AVFMTVTALM ILYSLLGWSA 480
  481 FAGTFALLAM IPLNFWCATF YGNYQADQLI LTDKRTSGIS EALNSIRVIK LLAWENLFYQ 540
  541 KIINVRDGEI RLLKKKATIF FLNHLIWFFG PTLVSAITFS VFIKFQNQTL TPTIAFTALS 600
  601 LFAILRTPMD QIASTVSLLI QSFISLERIQ DYLNESETRK YEILEQSNTK FGFEDASMEW 660
  661 EAAETSFKLK NISIDFKLNS LNAIIGPTGS GKSSLLLGLL GELNLLSGKI YVPTVESRDD 720
  721 LEIGKDGMTN SMAYCSQTPW LISGTIKDNV VFGEIFNKQK FDDVMKSCCL DKDIKAMTAG 780
  781 IRTDVGDGGF SLSGGQQQRI ALARAIYSSS RYLILDDCLS AVDPETALYI YEECLCGPMM 840
  841 KGRTCIITSH NISLVTKRAD WLVILDRGEV KSQGKPSDLI KSNEFLRESI NNDSKNTTHN 900
  901 QIDLKRSTTS KKTKNGDPEG GNSQDEVCAE VENFEETKME GSVKFSAYKW LADYFGGLGV 960
  961 VFVFTSSSIL IHGITLSQGF WLRYWLDTGS SGSKSTWLYR IVEGHSNIYF LLTYIIIGLV1020
 1021 SSFLTSGKVW IAIISGTNVT KKIFAKLLSS ILYAKLRFHN VTPTGRIMNR FSKDMDIIDQ1080
 1081 QLIPNFEGLS YSVVVCLWII LLIGYVTPQF LLFAIPLCAL YYTVCTLYLR ASRELKRIDN1140
 1141 INISPIHQLF AEAIKGVTTI RALADERRFI TQSLVAIDRS NAPFFYLNMA TEWITYRVDI1200
 1201 IGTLVLFSSS VMIIMKASYL DAGLAGILLS NAFSFTETAQ WIIKVFSSVE LLMSSVERIK1260
 1261 EYTDIPSESN GYISPPANWP QTGDVELKNL SLRYSPHSSK ALDNVSFKVK AGTKVGIVGR1320
 1321 TGAGKSSIIA AIYRLSDWEN GTITIDNKDI KHIPLERLRN SISCIPQDPT LFDGTVRSNL1380
 1381 DPFDRYSDVQ IYGVLSKVGL IEECDELCLI FEQEQPNFSS HKLRNRFIDL NTVVKSGGSN1440
 1441 LSQGQRQLLC LARSMLGARN IMLIDEATAS IDYISDAKIQ KTIRETMKNT TILTIAHRLR1500
 1501 SVIDYDKILV MEMGRVKEYD HPYTLISDRN TIFYRLCRQS GEFENLFELA KVSFDNKR