YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ITR2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.94
Transmembrane Helix	105	125	0.88
Non-Cytoplasmic	126	152	0.87
Transmembrane Helix	153	173	0.88
Cytoplasmic	174	181	0.74
Transmembrane Helix	182	200	0.94
Non-Cytoplasmic	201	206	0.76
Transmembrane Helix	207	228	0.91
Cytoplasmic	229	238	0.86
Transmembrane Helix	239	261	0.86
Non-Cytoplasmic	262	269	0.75
Transmembrane Helix	270	289	0.94
Cytoplasmic	290	356	0.95
Transmembrane Helix	357	375	0.89
Non-Cytoplasmic	376	395	0.86
Transmembrane Helix	396	417	0.93
Cytoplasmic	418	424	0.90
Transmembrane Helix	425	447	0.95
Non-Cytoplasmic	448	465	0.88
Transmembrane Helix	466	488	0.90
Cytoplasmic	489	502	0.91
Transmembrane Helix	503	527	0.83
Non-Cytoplasmic	528	533	0.79
Transmembrane Helix	534	554	0.91
Cytoplasmic	555	609	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSTAASSR WTKSRLSHFF PSYTNSSGMG AASTDQSSTQ GEELHHRKHC EEDNDGQKPK  60
   61 KSPVSTSTMQ IKSRQDEDED DGRIVIKPVN DEDDTSVIIT FNQSISPFII TLTFVASISG 120
  121 FMFGYDTGYI SSALISINRD LDNKVLTYGE KELITAATSL GALITSVGAG TAADVFGRRP 180
  181 CLMFSNLMFL IGAILQITAH KFWQMAAGRL IMGFGVGIGS LISPLFISEI APKMIRGRLT 240
  241 VINSLWLTGG QLIAYGCGAG LNHVKNGWRI LVGLSLIPTV LQFSFFCFLP DTPRYYVMKG 300
  301 DLKRAKMVLK RSYVNTEDEI IDQKVEELSS LNQSIPGKNP ITKFWNMVKE LHTVPSNFRA 360
  361 LIIGCGLQAI QQFTGWNSLM YFSGTIFETV GFKNSSAVSI IVSGTNFVFT LIAFFCIDKI 420
  421 GRRYILLIGL PGMTVALVIC AIAFHFLGIK FNGADAVVAS DGFSSWGIVI IVFIIVYAAF 480
  481 YALGIGTVPW QQSELFPQNV RGVGTSYATA TNWAGSLVIA STFLTMLQNI TPTGTFSFFA 540
  541 GVACLSTIFC YFCYPELSGL ELEEVQTILK DGFNIKASKA LAKKRKQQVA EGAAHHKLKF 600
  601 EPTQEIVES