YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSC2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.71
Transmembrane Helix	59	79	0.91
Non-Cytoplasmic	80	95	0.63
Transmembrane Helix	96	120	0.79
Cytoplasmic	121	138	0.66
Transmembrane Helix	139	157	0.78
Non-Cytoplasmic	158	174	0.80
Transmembrane Helix	175	200	0.70
Cytoplasmic	201	219	0.82
Transmembrane Helix	220	239	0.95
Non-Cytoplasmic	240	245	0.78
Transmembrane Helix	246	265	0.93
Cytoplasmic	266	296	0.85
Transmembrane Helix	297	318	0.93
Non-Cytoplasmic	319	384	0.53
Transmembrane Helix	385	407	0.86
Cytoplasmic	408	417	0.44
Transmembrane Helix	418	438	0.84
Non-Cytoplasmic	439	451	0.53
Transmembrane Helix	452	477	0.83
Cytoplasmic	478	487	0.53
Transmembrane Helix	488	510	0.85
Non-Cytoplasmic	511	526	0.53
Transmembrane Helix	527	549	0.90
Cytoplasmic	550	555	0.47
Transmembrane Helix	556	577	0.89
Non-Cytoplasmic	578	724	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQELLAKV PLLLSYPTII LSSNLIVPSH NDLISRAAST SAAEYADEKL IFFSTDHAIR  60
   61 LIFLPTFVAS SFNLFAHYFN FINYSSRRKY YVLFTAIYFL SILTAIFHPI QSTCITLLII 120
  121 KLLTTADESS PKIALNFKTI LKTFVPFITL TLVILRWDPS FDASSGDVNK ISTSLAAYAL 180
  181 LILTLRYASP LILSTLSSSI GVVSKDTSVA QHSISRNKRF PLILVLPIFS FVLLYLMTIV 240
  241 NKTYNIQLLM VFVFFGCLSI FFLSLKDLFT EDGNQKKGGQ EDEYCRMFDI KYMISYLWLT 300
  301 RFTILLTGIM AIVVHFLSFN EITSSIKTDL LSLLFVVVAE YVSSFSNKQP DSHSHNHAHH 360
  361 HSHLTDSLPL ENESMFKQMA LNKDTRSIFS FLLLNTAFMF VQLLYSFRSK SLGLLSDSLH 420
  421 MALDCTSLLL GLIAGVLTKK PASDKFPFGL NYLGTLAGFT NGVLLLGIVC GIFVEAIERI 480
  481 FNPIHLHATN ELLVVATLGL LVNLVGLFAF DHGAHDHGGT DNENMKGIFL HILADTLGSV 540
  541 GVVISTLLIK LTHWPIFDPI ASLLIGSLIL LSALPLLKST SANILLRLDD KKHNLVKSAL 600
  601 NQISTTPGIT GYTTPRFWPT ESGSSGHSHA HTHSHAENHS HEHHHDQKNG SQEHPSLVGY 660
  661 IHVQYVDGEN STIIKKRVEK IFENVSIKAW VQVEPQNSTC WCRATSMNTI SANPNSLPLQ 720
  721 PIAN