YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVT5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.93
Transmembrane Helix	8	28	0.91
Non-Cytoplasmic	29	35	0.74
Transmembrane Helix	36	55	0.94
Cytoplasmic	56	79	0.85
Transmembrane Helix	80	103	0.79
Non-Cytoplasmic	104	133	0.86
Transmembrane Helix	134	151	0.93
Cytoplasmic	152	159	0.77
Transmembrane Helix	160	181	0.93
Non-Cytoplasmic	182	201	0.91
Transmembrane Helix	202	223	0.84
Cytoplasmic	224	239	0.91
Transmembrane Helix	240	262	0.89
Non-Cytoplasmic	263	280	0.83
Transmembrane Helix	281	300	0.90
Cytoplasmic	301	361	0.97
Transmembrane Helix	362	381	0.93
Non-Cytoplasmic	382	387	0.67
Transmembrane Helix	388	411	0.88
Cytoplasmic	412	430	0.92
Transmembrane Helix	431	454	0.91
Non-Cytoplasmic	455	459	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSNVRSGVL TLLHTACGAG VLAMPFAFKP FGLMPGLITL TFCGICSLCG LLLQTRIAKY  60
   61 VPKSENASFA KLTQLINPSI SVVFDFAIAV KCFGVGVSYL IIVGDLVPQI VQSIFYRNDD 120
  121 NMSGSQEHHM FLDRRLYITL IIVFVISPLC FKRSLNSLRY ASMIAIVSVA YLSGLIIYHF 180
  181 VNRHQLERGQ VYFMVPHGDS QSHSPLTTLP IFVFAYTCHH NMFSVINEQV DKSFKVIRRI 240
  241 PIFAIVLAYF LYIIIGGTGY MTFGENIVGN ILTLYPNSIS TTIGRLAMLL LVMLAFPLQC 300
  301 HPCRSSVKNI IIFIENFRKG KLYDNRASFI PLDNFNSEDP QEAPTQQNNE EPNLRSESLR 360
  361 HINIITLCIL LFSYLLAISI TSLAKVLAIV GATGSTSISF ILPGLFGYKL IGSEFTGTNE 420
  421 RVPTSIKIFK YLSLSLFIWG IAVMVASLSA IVFLGTSSH