YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	153	0.68
Transmembrane Helix	154	182	0.70
Non-Cytoplasmic	183	198	0.76
Transmembrane Helix	199	220	0.93
Cytoplasmic	221	231	0.85
Transmembrane Helix	232	252	0.81
Non-Cytoplasmic	253	253	0.36
Transmembrane Helix	254	273	0.72
Cytoplasmic	274	284	0.54
Transmembrane Helix	285	309	0.85
Non-Cytoplasmic	310	610	0.65
Transmembrane Helix	611	632	0.92
Cytoplasmic	633	643	0.91
Transmembrane Helix	644	663	0.92
Non-Cytoplasmic	664	674	0.79
Transmembrane Helix	675	697	0.86
Cytoplasmic	698	710	0.86
Transmembrane Helix	711	730	0.95
Non-Cytoplasmic	731	759	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSTGYS KNNAAHIKQE NTLRQRESSS ISVSEELSSA DERDAEDFSK EKPAAQSSLL  60
   61 RLESVVMPVI FTALALFTRM YKIGINNHVV WDEAHFGKFG SYYLRHEFYH DVHPPLGKML 120
  121 VGLSGYLAGY NGSWDFPSGE IYPDYLDYVK MRLFNASFSA LCVPLAYFTA KAIGFSLPTV 180
  181 WLMTVLVLFE NSYSTLGRFI LLDSMLLFFT VASFFSFVMF HNQRSKPFSR KWWKWLLITG 240
  241 ISLGCTISVK MVGLFIITMV GIYTVIDLWT FLADKSMSWK TYINHWLARI FGLIIVPFCI 300
  301 FLLCFKIHFD LLSHSGTGDA NMPSLFQARL VGSDVGQGPR DIALGSSVVS IKNQALGGSL 360
  361 LHSHIQTYPD GSNQQQVTCY GYKDANNEWF FNRERGLPSW SENETDIEYL KPGTSYRLVH 420
  421 KSTGRNLHTH PVAAPVSKTQ WEVSGYGDNV VGDNKDNWVI EIMDQRGDED PEKLHTLTTS 480
  481 FRIKNLEMGC YLAQTGNSLP EWGFRQQEVV CMKNPFKRDK RTWWNIETHE NERLPPRPED 540
  541 FQYPKTNFLK DFIHLNLAMM ATNNALVPDP DKFDYLASSA WQWPTLNVGL RLCGWGDDNP 600
  601 KYFLLGTPAS TWASSVAVLA FMATVVILLI RWQRQYVDLR NPSNWNVFLM GGFYPLLAWG 660
  661 LHYMPFVIMS RVTYVHHYLP ALYFALIILA YCFDAGLQKW SRSKCGRIMR FVLYAGFMAL 720
  721 VIGCFWYFSP ISFGMEGPSS NFRYLNWFST WDIADKQEA