YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Contaminant_SPG1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEKKVKYF LRKSAFGLAS VSAAFLVGST VFAVDSPIED TPIIRNGGEL TNLLGNSETT  60
   61 LALRNEESAT ADLTAAAVAD TVAAAAAENA GAAAWEAAAA ADALAKAKAD ALKEFNKYGV 120
  121 SDYYKNLINN AKTVEGIKDL QAQVVESAKK ARISEATDGL SDFLKSQTPA EDTVKSIELA 180
  181 EAKVLANREL DKYGVSDYHK NLINNAKTVE GVKELIDEIL AALPKTDTYK LILNGKTLKG 240
  241 ETTTEAVDAA TAEKVFKQYA NDNGVDGEWT YDDATKTFTV TEKPEVIDAS ELTPAVTTYK 300
  301 LVINGKTLKG ETTTKAVDAE TAEKAFKQYA NDNGVDGVWT YDDATKTFTV TEMVTEVPGD 360
  361 APTEPEKPEA SIPLVPLTPA TPIAKDDAKK DDTKKEDAKK PEAKKDDAKK AETLPTTGEG 420
  421 SNPFFTAAAL AVMAGAGALA VASKRKED

Type	Start	End	Confidence
Signal Peptide	1	33	0.98
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	423	0.99
Transmembrane Helix	424	443	0.85
Cytoplasmic	444	448	0.84