YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KRT3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQASKTSG GGSQGFSGRS AVVSGSSRMS CVAHSGGAGG GAYGFRSGAG GFGSRSLYNL  60
   61 GGDKSISISV AAGGSRAGGF GGGRSSCAFA GGYGGGFGSG YGGGFGGGFG GGRGMGGGFG 120
  121 GAGGFGGAGG FGGAGGFGGP GGFGGSGGFG GPGSLGSPGG FAPGGFPGGI QEVTTNQSLL 180
  181 QPLKVETDPQ IGQVKAQERE QIKTLNNKFA SFIDKVRFLE QQNKVLETKW NLLQQQGTSS 240
  241 ISGTNNLEPL FENHINYLRS YLDNILGERG RLDSELKNME DLVEDFKKKY EDEINKRYAA 300
  301 ENEFVTLKKD VDSAYMNKVE LQAKVDALID EIDFLRTLYD AELSQMQSHI SDTSVVLSMD 360
  361 NNRSLDLDSI IAEVGAQYED IAQRSKAEAE ALYQTKLGEL QTTAGRHGDD LRNTKSEIIE 420
  421 LNRMIQRLRA EIEGVKKQNA NLQTAIAQAE QHGEMALKDA NAKLQELQAA LQQAKDDLAR 480
  481 LLRDYQELMN VKLALDVEIA TYRKLLEGEE YSRMSGECPS AVSISVVSSS TTSASAGGYG 540
  541 GGYGGGMGGG LGGGFSAGGG SGIGFGRGGG GGIGGGFGGG TSGFSGGSGF GSISGARYGV 600
  601 SGGGFSSASN RGGSIKFSQS SQSSQRYSR

Type	Start	End	Confidence
Cytoplasmic	1	85	0.58
Transmembrane Helix	86	109	0.78
Non-Cytoplasmic	110	117	0.50
Transmembrane Helix	118	151	0.68
Cytoplasmic	152	535	0.73
Transmembrane Helix	536	565	0.65
Non-Cytoplasmic	566	570	0.45
Transmembrane Helix	571	596	0.69
Cytoplasmic	597	629	0.61