YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	contaminant_KERA...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTCSRQFTSS SSMKGSCGIG GGIGAGSSRI SSVLAGASCP ASTYGGASVS SRFSSGGACG  60
   61 LGGGYGGGFS SSSSFGSGFG GGYGGGLGAG FGGGLGAGFG GGFAGGDGLL VGSEKVTMQN 120
  121 LNDRLASYLD KVRALEEANA DLEVKIRDWY QRQRPSEIKD YSPYFKTIED LRNKIIAATI 180
  181 ENAHALLQID NARLAADDFR TKYEARTGLR QTVEADVNGL RRVLDELTLA RTDLEMQIEG 240
  241 LKEELAYLRK NHEEEMLALR GQTGGDVNVE MDAAPGVDLS RILNEMRDQY EQMAEKNRRD 300
  301 AETWFLSKTE ELNKEVASNS ELVQSSRSEV TELRRVLQGL EIELQSQLSM KASLENSLEE 360
  361 TKGRYCMQLS QIQGLIGSVE EQLAQLRCEM EQQSQEYQIL LDVKTRLEQE IATYRRLLEG 420
  421 EDAHLSSQQA SGQSYSSREV FTSSSSSSAV RPGPSSEQSS SSFSQGQSS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.48
Transmembrane Helix	53	75	0.64
Non-Cytoplasmic	76	82	0.42
Transmembrane Helix	83	111	0.73
Cytoplasmic	112	469	0.55