YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TDA6
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCVLARILL WFLIVDLSVI RALVLPPLKD YDPLEPLMKR DMAMGQRNRF KVDGQLPPIL  60
   61 NSTDVTDDQR SLHTPGEIPS YVINHCPLVH LYSEEKYWPS DIAEYVQNFQ IKDKNGNSIS 120
  121 THENLTLHDL KAEYHVDLFG NKTETHIPSS EVFLTSLDDF DKDPKWLLGH LPEYGTGYNS 180
  181 KAPAILIVVD KGNGWVDAFW FFFYPFNHGP FIMGHGPWGN HVGDWEHSLV RFYKGIPKYL 240
  241 WMSAHSSGTG YRYEAVEKFK KLRKRKQQDS DDGGDTILER PLIFSARGTH ANYASAGQHA 300
  301 HDIPFFFMPL SDFTDRGPLW DPSLNFYSYT FDGKTVTPSS EREESLGLDW LHFQGGWGDQ 360
  361 QLPARDPRQK WCVAQWKYIG GPRGPLFKKL DRLNLCGGVK KWNFWNGGCP ARRLIKKAEG 420
  421 LDSESTDLMG DNCGVLLYRI RPKWLRGILR FLMWRGILCS LMEFFTN

Type	Start	End	Confidence
Signal Peptide	1	22	0.74
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	467	0.95