YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MEP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.95
Transmembrane Helix	18	39	0.95
Cytoplasmic	40	48	0.82
Transmembrane Helix	49	69	0.95
Non-Cytoplasmic	70	109	0.97
Transmembrane Helix	110	130	0.93
Cytoplasmic	131	139	0.79
Transmembrane Helix	140	160	0.94
Non-Cytoplasmic	161	172	0.89
Transmembrane Helix	173	194	0.91
Cytoplasmic	195	207	0.88
Transmembrane Helix	208	227	0.89
Non-Cytoplasmic	228	239	0.75
Transmembrane Helix	240	260	0.95
Cytoplasmic	261	267	0.92
Transmembrane Helix	268	287	0.91
Non-Cytoplasmic	288	292	0.64
Transmembrane Helix	293	313	0.85
Cytoplasmic	314	324	0.82
Transmembrane Helix	325	349	0.82
Non-Cytoplasmic	350	370	0.92
Transmembrane Helix	371	394	0.93
Cytoplasmic	395	489	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGDGHLWT ETYDSSTVAF MILGAALVFF MVPGLGFLYS GLARRKSALA LIWVVIMATL  60
   61 VGILQWYFWG YSLAFSKTAT NNKFIGNLDS FGFRNVYGKI SDDSTYPELI YAIFQMMFMC 120
  121 VALSIIAGAT AERGKLFPHM VFLFVFATLV YCPITYWIWA PGGWAYQWGV LDWAGGGNIE 180
  181 ILSAVAGFVY SYFLGRRKEN LLINFRPHNV SMVTLGTSIL WFGWLLFNAA SSLSPNMRSV 240
  241 YAFMNTCLSA TTGGMTWCLL DYRSEKKWST VGLCSGIICG LVAATPSSGC ITLYGSLIQG 300
  301 IIAGVVCNFA TKIKYYLKVD DSLDLLAEHG IAGVVGLIFN ALFAADWVIG MDGTTKHKGG 360
  361 WLTHNWKQMY IQIAYIGASA GYCAVVTAII CFVLGKIPGV HLRVTEEAEA LGLDEDQIGE 420
  421 FAYDYVEVRR DYYQWGVDTD ALHTTCNGAN SASETNPTED SQNSSLSSAT VSGQNEKSNN 480
  481 PKLHHAKEA