YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DIP5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.99
Transmembrane Helix	91	113	0.92
Non-Cytoplasmic	114	119	0.75
Transmembrane Helix	120	139	0.91
Cytoplasmic	140	156	0.74
Transmembrane Helix	157	177	0.71
Non-Cytoplasmic	178	200	0.74
Transmembrane Helix	201	222	0.93
Cytoplasmic	223	230	0.77
Transmembrane Helix	231	253	0.88
Non-Cytoplasmic	254	283	0.86
Transmembrane Helix	284	307	0.79
Cytoplasmic	308	322	0.94
Transmembrane Helix	323	345	0.89
Non-Cytoplasmic	346	376	0.89
Transmembrane Helix	377	399	0.83
Cytoplasmic	400	422	0.93
Transmembrane Helix	423	444	0.91
Non-Cytoplasmic	445	453	0.85
Transmembrane Helix	454	477	0.88
Cytoplasmic	478	498	0.91
Transmembrane Helix	499	520	0.89
Non-Cytoplasmic	521	530	0.80
Transmembrane Helix	531	551	0.89
Cytoplasmic	552	608	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMPLKKMFT STSPRNSSSL DSDHDAYYSK QNPDNFPVKE QEIYNIDLEE NNVSSRSSTS  60
   61 TSPSARDDSF AVPDGKDENT RLRKDLKARH ISMIAIGGSL GTGLLIGTGT ALLTGGPVAM 120
  121 LIAYAFVGLL VFYTMACLGE MASYIPLDGF TSYASRYVDP ALGFAIGYTY LFKYFILPPN 180
  181 QLTAAALVIQ YWISRDRVNP GVWITIFLVV IVAINVVGVK FFGEFEFWLS SFKVMVMLGL 240
  241 ILLLFIIMLG GGPNHDRLGF RYWRDPGAFK EYSTAITGGK GKFVSFVAVF VYSLFSYTGI 300
  301 ELTGIVCSEA ENPRKSVPKA IKLTVYRIIV FYLCTVFLLG MCVAYNDPRL LSTKGKSMSA 360
  361 AASPFVVAIQ NSGIEVLPHI FNACVLVFVF SACNSDLYVS SRNLYALAID GKAPKIFAKT 420
  421 SRWGVPYNAL ILSVLFCGLA YMNVSSGSAK IFNYFVNVVS MFGILSWITI LIVYIYFDKA 480
  481 CRAQGIDKSK FAYVAPGQRY GAYFALFFCI LIALIKNFTV FLGHKFDYKT FITGYIGLPV 540
  541 YIISWAGYKL IYKTKVIKST DVDLYTFKEI YDREEEEGRM KDQEKEERLK SNGKNMEWFY 600
  601 EKFLGNIF