YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBD2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWKSYVFPG GHPPAALTTG LVVFLTAIYL LSFIFALRED LSLAPESLFK LQMSRLSLYP  60
   61 LIHLSLPHLL FNVLAIWAPL NLFEETHGTV YTGVFLNLSA LFAGILYCLL GKLLYPEALV 120
  121 AGASGWCFTL FAYYSFKESQ IRPRTRIFRT DYSIPTLYTP LVLLVAIAVV IPGSSFWGHF 180
  181 FGLCVGYAIG YKESWFNKIT PPGWIITKIE KSLDGLIRLI PWGIKYYRDE DIDRTKDYEP 240
  241 LMSTETPLPL HNDNSGTVLG TA

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.60
Transmembrane Helix	15	37	0.92
Cytoplasmic	38	55	0.61
Transmembrane Helix	56	80	0.85
Non-Cytoplasmic	81	87	0.56
Transmembrane Helix	88	110	0.84
Cytoplasmic	111	117	0.41
Transmembrane Helix	118	136	0.83
Non-Cytoplasmic	137	156	0.40
Transmembrane Helix	157	191	0.71
Cytoplasmic	192	262	0.67