YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGC1
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEIVGHRAF KARYPENTLL AFEKAYAAGA DVIETDLQMT SDGMVVVNHD SDTGRMWDKN  60
   61 LVIGESTWEE VKRLRCKEDG SLAMMTLKEI LTWAVCHPGA KLMLDIKFTN EKIIMIKTFV 120
  121 IMLEVKNDLK FWQERITWGL WLLDWYDFGI ETGVLKDFKV IVISLSLDIA SQFVKRSLTL 180
  181 NDPHYKLFGI SVHFVSSWTS QFRLRLLPVL MKNDIKVYLW TVNKPIDFKY LCELPIHGAI 240
  241 TDDPIKARKL CDGHTVAKKP TAEKKFVAPS LASVDGLRFH AFIKVYNILC TLLYSKWVHI 300
  301 KLCGWSIAYV IFLFLRTIHF L

Type	Start	End	Confidence
Non-Cytoplasmic	1	296	0.51
Transmembrane Helix	297	320	0.69
Cytoplasmic	321	321	0.32