YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYFPRTYAH LMRNVLAHNK GNIYLQIGTQ LHDTQIKIRF NGVRYISRNH GGKQQHINTA  60
   61 PIEFTPNFGY GDRTSNCNKK VESTAMKTLR CTDDISTSSG SEATTDASTQ LPFNVKLVDP 120
  121 MVRKSKRPSH AISEGLNMKT LKKKVIMPYL QLTKPRLTIL VMLSAICSYA LSPYPASVNE 180
  181 LLCLTVGTTL CSGSANAINM GREPEFDRQM VRTQARPVVR GDVTPTQAFE FAALIGTLGV 240
  241 SILYFGVNPT VAILGASNIA LYGWAYTSMK RKHIINTWLG ALVGMVPPLM GWAAASPLSH 300
  301 PGSWCLAGLL FAWQFPHFNT LSHNIRNEYK NAGYVMTAWK NPLLNARVSL RYSILMFPLC 360
  361 FGLSYFNITD WYYQIDSGLI NAWLTFWAFK FYWQQRINYS AKTLKDNVKF NKGLSVANIY 420
  421 ARKTFMASVL HLPAILILAI IHKKGRWDWI YPGEAKRPQE RF

Type	Start	End	Confidence
Cytoplasmic	1	155	0.93
Transmembrane Helix	156	172	0.87
Non-Cytoplasmic	173	230	0.63
Transmembrane Helix	231	265	0.73
Cytoplasmic	266	273	0.87
Transmembrane Helix	274	295	0.91
Non-Cytoplasmic	296	299	0.83
Transmembrane Helix	300	321	0.82
Cytoplasmic	322	347	0.91
Transmembrane Helix	348	368	0.88
Non-Cytoplasmic	369	374	0.69
Transmembrane Helix	375	393	0.59
Cytoplasmic	394	419	0.62
Transmembrane Helix	420	442	0.76
Non-Cytoplasmic	443	462	0.52