YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSU1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.69
Transmembrane Helix	15	36	0.89
Cytoplasmic	37	42	0.65
Transmembrane Helix	43	67	0.85
Non-Cytoplasmic	68	90	0.69
Transmembrane Helix	91	111	0.91
Cytoplasmic	112	130	0.63
Transmembrane Helix	131	152	0.92
Non-Cytoplasmic	153	178	0.71
Transmembrane Helix	179	204	0.80
Cytoplasmic	205	213	0.59
Transmembrane Helix	214	239	0.86
Non-Cytoplasmic	240	251	0.60
Transmembrane Helix	252	273	0.86
Cytoplasmic	274	300	0.60
Transmembrane Helix	301	325	0.76
Non-Cytoplasmic	326	388	0.63
Transmembrane Helix	389	409	0.93
Cytoplasmic	410	458	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVANWVLALT RQFDPFMFMM VMGVGISSNI LYSFPYPARW LRICSYIMFA IACLIFIAVQ  60
   61 ALQILHLIVY IKEKSFREYF NDFFRNMKHN LFWGTYPMGL VTIINFLGAL SKANTTKSPT 120
  121 NARNLMIFVY VLWWYDLAVC LVIAWGISFL IWHDYYPLEG IGNYPSYNIK MASENMKSVL 180
  181 LLDIIPLVVV ASSCGTFTMS EIFFHAFNRN IQLITLVICA LTWLHAIIFV FILIAIYFWS 240
  241 LYINKIPPMT QVFTLFLLLG PMGQGSFGVL LLTDNIKKYA GKYYPTDNIT REQEILTIAV 300
  301 PWCFKILGMV SAMALLAMGY FFTVISVVSI LSYYNKKEIE NETGKVKRVY TFHKGFWGMT 360
  361 FPMGTMSLGN EELYVQYNQY VPLYAFRVLG TIYGGVCVCW SILCLLCTLH EYSKKMLHAA 420
  421 RKSSLFSESG TEKTTVSPYN SIESVEESNS ALDFTRLA