YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDR10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	515	0.72
Transmembrane Helix	516	530	0.29
Cytoplasmic	531	541	0.49
Transmembrane Helix	542	565	0.83
Non-Cytoplasmic	566	572	0.52
Transmembrane Helix	573	599	0.78
Cytoplasmic	600	653	0.59
Transmembrane Helix	654	675	0.91
Non-Cytoplasmic	676	685	0.68
Transmembrane Helix	686	706	0.91
Cytoplasmic	707	793	0.83
Transmembrane Helix	794	813	0.91
Non-Cytoplasmic	814	1258	0.85
Transmembrane Helix	1259	1279	0.73
Cytoplasmic	1280	1287	0.53
Transmembrane Helix	1288	1310	0.78
Non-Cytoplasmic	1311	1339	0.59
Transmembrane Helix	1340	1362	0.82
Cytoplasmic	1363	1378	0.56
Transmembrane Helix	1379	1403	0.90
Non-Cytoplasmic	1404	1411	0.50
Transmembrane Helix	1412	1433	0.90
Cytoplasmic	1434	1445	0.46
Transmembrane Helix	1446	1464	0.60
Non-Cytoplasmic	1465	1533	0.90
Transmembrane Helix	1534	1553	0.96
Cytoplasmic	1554	1564	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQAPSSSNS GLNQGNAAPD GPPNETQPYE GLDAAAQEEI KELARTLTSQ SSLLSQEKRI  60
   61 TGTGDPNTLT AASSSSLSRS IFASDIKGVN PILLDVNDPD YDETLDPRSE NFSSVRWVRN 120
  121 MAQICENDSD FYKPFSLGCA WKDLSASGDS ADITYQGTFG NMPIKYLKMS WRCISRRLFH 180
  181 RTHGKSEDND SGFQILKPMD GCINPGELLV VLGRPGAGCT TLLKSISVNT HGFKISPDTI 240
  241 ITYNGFSNKE IKNHYRGEVV YNAESDIHIP HLTVFQTLYT VARLKTPRNR IKGVDRDTFA 300
  301 KHMTEVAMAT YGLSHTADTK VGNDFVRGVS GGERKRVSIA EVSICGSKFQ CWDNATRGLD 360
  361 SATALEFIKA LKTQATITKS AATVAIYQCS KDAYDLFDKV CVLYDGYQIF FGPSKQAKKY 420
  421 FQRMGYVCPE RQTTADYLTS ITSPSERIKD KDMVKHGIMI PQTAYEMNQY WIQSEEYKQL 480
  481 QVQVNKHLDT DSSQQREQIK NAHIAKQSKR ARPSSPYTVS FFLQVKYILI RDIWRIKNDP 540
  541 SIQLFTVLSH AAMALILGSM FYEVMLSTTT TTFYYRGAAI FFAILFNAFS SLLEIFSLYE 600
  601 TRPITEKHKT YSLYRPSADA FASTFSDVPT KLATAVTFNI PYYFLINLKR DAGAFFFYFL 660
  661 INIITVFAMS HLFRCIGSVS KTLPQAMVPA SVLLLAFAMY TGFAIPRVQM LGWSKWISYI 720
  721 NPLSYLFESL MINEFHGRNF PCAQYIPSGP NYVNATGDEV TCSALGSIPG NNYVSGDDFI 780
  781 QTNYGYRHKN KWRSVGIGLA YIIFFLFLYL FFCEYNEGAK QNGEMLVFPH SVVKKMKKKG 840
  841 IVSEKKKKNQ PTLSTSDAEK DVEMNNNSSA TDSRFLRDSD AAIMGNDKTV AKEHYSSPSS 900
  901 SASQSNSFSK SDDIELSKSQ AIFHWKNLCY DIPIKNGKRR ILDNVDGWVK PGTLTALIGA 960
  961 SGAGKTTLLD CLAERTTMGL ITGDVFVDGR PRDQSFPRSI GYCQQQDLHL KTATVRESLR1020
 1021 FSAYLRQADD VSIEEKDKYV EEVIEVLEMK LYADAIVGVP GEGLNVEQRK RLTIGVELAA1080
 1081 KPKLLVFLDE PTSGLDSQTA WSTCQLMKKL ASRGQAILCT IHQPSALLMQ EFDRLLFLQE1140
 1141 GGQTVYFGEL GKGCKTMINY FEAHGAHKCP PDANPAEWML EIVGAAPGTH ASQDYFAIWR1200
 1201 DSEEYREMQK ELDWMERELP KRTEGSSNEE QKEFATSTLY QIKLVSYRLF HQYWRTPFYL1260
 1261 WSKFFSTIVS ELFIGFTFFK ANTSLQGLQN QMLAIFMFTV VFNPILQQYL PLFVQQRELY1320
 1321 EARERPSRTF SWKAFIVSQI LVEIPWNLLA GTIAFFVYYY PVGFYRNASY ANQLHERGAL1380
 1381 FWLFACAFYV YISSMGVLVI SCIEIAENAA NLASLFFIMS LSFCGVLATP NILPRFWIFM1440
 1441 YRVSPLTYLI DALLSVGLAN ASVVCSSNEL LKIVPPSGMT CSEYMEPYMQ STGTGYLLDG1500
 1501 SSETECHFCQ FSSTNDYLAT VSSSYSRRWM NYGIFSAYIV FDYCAAIFLY WLVRVPKKSK1560
 1561 KLKK