YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THI72
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.80
Transmembrane Helix	48	70	0.83
Non-Cytoplasmic	71	77	0.63
Transmembrane Helix	78	99	0.87
Cytoplasmic	100	111	0.65
Transmembrane Helix	112	132	0.87
Non-Cytoplasmic	133	137	0.57
Transmembrane Helix	138	157	0.62
Cytoplasmic	158	168	0.53
Transmembrane Helix	169	190	0.85
Non-Cytoplasmic	191	196	0.50
Transmembrane Helix	197	218	0.94
Cytoplasmic	219	274	0.62
Transmembrane Helix	275	300	0.85
Non-Cytoplasmic	301	325	0.82
Transmembrane Helix	326	348	0.84
Cytoplasmic	349	368	0.77
Transmembrane Helix	369	389	0.83
Non-Cytoplasmic	390	394	0.87
Transmembrane Helix	395	420	0.83
Cytoplasmic	421	441	0.98
Transmembrane Helix	442	464	0.89
Non-Cytoplasmic	465	483	0.83
Transmembrane Helix	484	504	0.88
Cytoplasmic	505	599	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGTRISRA LRFLEIPVKN RASVNFLRNP DLQPIKSVNQ TWGFWSNFAY WGVLSFNVGM  60
   61 WIGGSSALTV GLSYSETIGA FIIADLLTIL FALANSCPGY DWKVGFTLAQ RFVFGIYGSA 120
  121 LGIIIRILMS IVYYGSNAWL GGLCVNMILD SWSHHYLHLP NTLSSKVAMT TKELIGFIIF 180
  181 HILTAFCYFM KPYHMNYILI WSCVGTFFAM LGMVIYLTKS AHGVGDLFTS THSTVTGSKK 240
  241 AWAWVYTISY WYGSVSPGCT NQSDFSRFGS SNCAIWTGTI VALLIPATLI PVFGIIGASA 300
  301 CEKLYGQTFW MPMDIFDNWL TTNYSAGARA ATFFCGFCFV MSQISYTISN CGFASGMDLA 360
  361 GLLPKYVDIK RGAIFAACVS WACLPWNFYN SSSTFLTVMS SFGVVMTPII TVMICDNFLI 420
  421 RKRQYSVTNA FVLKGEYYFT KGVNWRAIVA WVCGMAPGLP GIAWEVNNDY FHNTGIINFF 480
  481 YGDSFFSFLI SFFVYWGLCL LFPFKITVKH DDKDYYGAFT DEEARKKGMV PYSEISEEEI 540
  541 RAYTLGECFT SGHEYKPESS DDELPELTKT SSENTKVFEI VHQKDNEKES STSSEKQIA