YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALE1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.66
Transmembrane Helix	21	39	0.69
Cytoplasmic	40	46	0.88
Transmembrane Helix	47	65	0.85
Non-Cytoplasmic	66	70	0.48
Transmembrane Helix	71	90	0.65
Cytoplasmic	91	232	0.74
Transmembrane Helix	233	252	0.80
Non-Cytoplasmic	253	288	0.57
Transmembrane Helix	289	309	0.56
Cytoplasmic	310	366	0.90
Transmembrane Helix	367	384	0.60
Non-Cytoplasmic	385	387	0.51
Transmembrane Helix	388	405	0.38
Cytoplasmic	406	429	0.60
Transmembrane Helix	430	449	0.70
Non-Cytoplasmic	450	458	0.65
Transmembrane Helix	459	482	0.82
Cytoplasmic	483	619	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNPVDAVLT KIITNYGIDS FTLRYAICLL GSFPLNAILK RIPEKRIGLK CCFIISMSMF  60
   61 YLFGVLNLVS GFRTLFISTM FTYLISRFYR SKFMPHLNFM FVMGHLAINH IHAQFLNEQT 120
  121 QTTVDITSSQ MVLAMKLTSF AWSYYDGSCT SESDFKDLTE HQKSRAVRGH PPLLKFLAYA 180
  181 FFYSTLLTGP SFDYADFDSW LNCEMFRDLP ESKKPMRRHH PGERRQIPKN GKLALWKVVQ 240
  241 GLAWMILSTL GMKHFPVKYV LDKDGFPTRS FIFRIHYLFL LGFIHRFKYY AAWTISEGSC 300
  301 ILCGLGYNGY DSKTQKIRWD RVRNIDIWTV ETAQNTREML EAWNMNTNKW LKYSVYLRVT 360
  361 KKGKKPGFRS TLFTFLTSAF WHGTRPGYYL TFATGALYQT CGKIYRRNFR PIFLREDGVT 420
  421 PLPSKKIYDL VGIYAIKLAF GYMVQPFIIL DLKPSLMVWG SVYFYVHIIV AFSFFLFRGP 480
  481 YAKQVTEFFK SKQPKEIFIR KQKKLEKDIS ASSPNLGGIL KAKIEHEKGK TAEEEEMNLG 540
  541 IPPIELEKWD NAKEDWEDFC KDYKEWRNKN GLEIEEENLS KAFERFKQEF SNAASGSGER 600
  601 VRKMSFSGYS PKPISKKEE