YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ECM3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.46
Transmembrane Helix	17	36	0.89
Cytoplasmic	37	43	0.46
Transmembrane Helix	44	63	0.57
Non-Cytoplasmic	64	72	0.82
Transmembrane Helix	73	94	0.93
Cytoplasmic	95	105	0.71
Transmembrane Helix	106	125	0.86
Non-Cytoplasmic	126	142	0.89
Transmembrane Helix	143	163	0.93
Cytoplasmic	164	425	0.96
Transmembrane Helix	426	446	0.88
Non-Cytoplasmic	447	474	0.87
Transmembrane Helix	475	496	0.87
Cytoplasmic	497	506	0.77
Transmembrane Helix	507	529	0.67
Non-Cytoplasmic	530	546	0.64
Transmembrane Helix	547	568	0.74
Cytoplasmic	569	585	0.46
Transmembrane Helix	586	607	0.89
Non-Cytoplasmic	608	613	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHITLGQAI WASVRPIIKI YLIIGVGFGL CKMNILTVQA TRSISDIVLT ILLPCLSFNK  60
   61 IVANIEDNDI KDVGIICLTS VILFATGLGF AFIVRSVLPV PKRWRGGILA GGMFPNISDL 120
  121 PIAYLQSMDQ GFIFTEAEGE KGVANVIIFL AMFLICVFNL GGFRLIENDF HYKGDDDEEN 180
  181 TLTNDDSAQQ PTQPIEGNSS SSSNQDILKE PNESTVPNSS QASYISEKNK KEKTELSVPK 240
  241 PTHTAPPAID DRSSNSSAVV SIDSITHSLR TNHVDAQSVS ELNDPTYRTR SQPIAYTTES 300
  301 RTSHVHNNRR NSITGSLRSI DMRELPAEGM SDLIREYSNV DQYGRRRKSS ISSQGAPSVL 360
  361 QADGTISPNL TRTSTLQRVK TSNLTRIITS DATVSKKDIE TSGSSLPKWL QKFPLTKFFV 420
  421 FFLKNCLRPC SMAVILALII AFIPWVKALF VTTSNTPKIK QAPDNAPALT FIMDFTSYVG 480
  481 AASVPFGLIL LGATLGRLKI GKLYPGFWKS AVVLVFLRQC IMPIFGVLWC DRLVKAGWLN 540
  541 WENDKMLLFV TAITWNLPTM TTLIYFTASY TPEDETEPVQ MECTSFFLML QYPLMVVSLP 600
  601 FLVSYFIKVQ MKL