YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YOR088W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMERMDSPK WLGSHNFYQG RFTGGSVIDL SFQPRKIKGA CIPKLFADDL LILFLGLYTL  60
   61 VVNGKDSERV QSFDLLESIF YVFNTGFILD ELTKLYYIGY AHLSFWNLFN DTTYLIITFA 120
  121 MGFRAMSVTP LNAKYSSEDW DKISYRVLSC AAPFVWSRLL LYLESQRFIG IMLVILKHMM 180
  181 KESIVFFFLL FLIMIGFTQG FLGLDSADGK RDITGPILGN LTITVLGLGS FDVFEEFAPP 240
  241 YAAILYYGYY FIVSVILLNI LIALYSTAYQ KVIDNADDEY MALMSQKTLR YIRAPDEDVY 300
  301 VSPLNLIEVF MTPIFRILPP KRAKDLSYTV MTIVYSPFLL LISVKETREA RRIKYNRMKR 360
  361 LNDDANEYDT PWDLTDGYLD DDDGLFSDNR NSGMRATQLK NSRSLKLQRT AEQEDVHFKV 420
  421 PKKWYKNVKK CSPSFEQYDN DDTEDDAGED KDEVKELTKK VENLTAVITD LLEKLDIKDK 480
  481 KE

Type	Start	End	Confidence
Cytoplasmic	1	44	0.88
Transmembrane Helix	45	62	0.49
Non-Cytoplasmic	63	107	0.45
Transmembrane Helix	108	128	0.72
Cytoplasmic	129	142	0.48
Transmembrane Helix	143	163	0.75
Non-Cytoplasmic	164	182	0.43
Transmembrane Helix	183	204	0.91
Cytoplasmic	205	212	0.46
Transmembrane Helix	213	234	0.78
Non-Cytoplasmic	235	242	0.55
Transmembrane Helix	243	265	0.88
Cytoplasmic	266	482	0.55