YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.67
Transmembrane Helix	47	70	0.82
Non-Cytoplasmic	71	76	0.54
Transmembrane Helix	77	99	0.84
Cytoplasmic	100	107	0.62
Transmembrane Helix	108	132	0.80
Non-Cytoplasmic	133	168	0.57
Transmembrane Helix	169	190	0.87
Cytoplasmic	191	196	0.72
Transmembrane Helix	197	218	0.94
Non-Cytoplasmic	219	240	0.74
Transmembrane Helix	241	260	0.79
Cytoplasmic	261	272	0.66
Transmembrane Helix	273	296	0.87
Non-Cytoplasmic	297	325	0.71
Transmembrane Helix	326	348	0.75
Cytoplasmic	349	368	0.75
Transmembrane Helix	369	389	0.82
Non-Cytoplasmic	390	395	0.83
Transmembrane Helix	396	420	0.86
Cytoplasmic	421	441	0.97
Transmembrane Helix	442	464	0.90
Non-Cytoplasmic	465	483	0.87
Transmembrane Helix	484	504	0.89
Cytoplasmic	505	598	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSSIVSKF LRYLEIPAKN RTAVNFLRNP DLQPIKSANQ TWGFWSNLAY WGAVSFTAGT  60
   61 WMSGSAALSV GLSYPETIVS FLLGNVLTII FTMANSYPGY DWKIGFTLAQ RFVFGIYGSA 120
  121 FGIIIRILMS IVNYGSNAWL GGLSINMILD SWSHHYLHLP NTLSPSVAMT TKQLVGFIIF 180
  181 HVLTALCYFM KPYHMNYLLI WSCVATCFAM LGIVIYLTKN AHGVGELFTS TKSTVTGSKR 240
  241 AWAWVYMISY WFGSISPGST NQSDYSRFGS SNLAIWTGSV CALLIPATLV PIFGVISAST 300
  301 CDKLYGKQFW MPMDIFDYWL TNNYSAGARA GAFFCGLCFT MSQMSSTISN CGFATGMDMA 360
  361 GLLPKYVDIK RGALFCACIS WACLPWNFYN SSSTFLTVMS SFGVVMTPII AVMICDNFLI 420
  421 RKRQYSITNA FILKGEYYFT KGVNWRAIVA WVCGMAPGLP GIAWEVNNNY FHDSGIVKFF 480
  481 YGDSFFSFLI SFFVYWGLCV FFPFKITVRH DDKDYYGAFT DEEARKKGMI PYSEISEEEI 540
  541 RAYTLGECYT TGHEYKPESS DNESPELIKT SSENTNVFEI VHQKDDEKHS FSTTQQVV