YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.91
Transmembrane Helix	44	63	0.82
Non-Cytoplasmic	64	134	0.93
Transmembrane Helix	135	157	0.86
Cytoplasmic	158	167	0.80
Transmembrane Helix	168	189	0.87
Non-Cytoplasmic	190	225	0.68
Transmembrane Helix	226	245	0.90
Cytoplasmic	246	264	0.69
Transmembrane Helix	265	287	0.91
Non-Cytoplasmic	288	305	0.64
Transmembrane Helix	306	324	0.57
Cytoplasmic	325	382	0.80
Transmembrane Helix	383	401	0.88
Non-Cytoplasmic	402	407	0.77
Transmembrane Helix	408	427	0.89
Cytoplasmic	428	447	0.76
Transmembrane Helix	448	467	0.91
Non-Cytoplasmic	468	472	0.82
Transmembrane Helix	473	491	0.89
Cytoplasmic	492	510	0.76
Transmembrane Helix	511	529	0.93
Non-Cytoplasmic	530	546	0.83
Transmembrane Helix	547	569	0.91
Cytoplasmic	570	577	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGDRSRQNM AVTKKAKLKK NDEPKKVLKT AATEKGEGSK RYSLWNFWIS TLFLKLLLIP  60
   61 DYFSTDFDVH RNWLAITNKL PISEWYYEHT SQWTLDYPPF FAYFEWFLSQ FVPKSVRDDG 120
  121 CLDIVEIGKF GLPTIVFQRL TVIFSEILLF VILQIYINTT KLSERSQSFV VASSIVLSPG 180
  181 FLIIDHIHFQ YNGFLFAILI GSIVAAKNKR YILCAVLYTT AICFKHIFLY LAPCYFVFLL 240
  241 RAYVLNVNNF KFKSYKDFLF LIRWANLLKL ATVVVGIFTI CFLPFAHQMP QVLSRLFPFS 300
  301 RGLTHAYWAP NFWALYSFMD KILTTVMLKL PYVHTFATKF IKPPLIPQNI KEINERLAAN 360
  361 NNGSKGLVQD VFFVILPQIP PKLTFILTIF YQVLAVLPLL FDPSFKRFVG SLTLCGLASF 420
  421 LFGWHVHEKA IMLVIIPFTF LVGFDRRLLV PFMLVASAGY VSLYPLLYKG QDFFIKTLYT 480
  481 YVWCIIYFAA FRKTTKISSS VERRIFFLDR LALTYIFSLL PIVTVLQILD EVKWRYSFLQ 540
  541 KFEFLGLMIY SVYCSLGIIS SWFALSWLYN FDELLWQ