YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIR4
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSKITLLA ALAAIAYAQT QAQINELNVV LDDVKTNIAD YITLSYTPNS GFSLDQMPAG  60
   61 IMDIAAQLVA NPSDDSYTTL YSEVDFSAVE HMLTMVPWYS SRLLPELEAM DASLTTSSSA 120
  121 ATSSSEVASS SIASSTSSSV APSSSEVVSS SVAPSSSEVV SSSVAPSSSE VVSSSVASSS 180
  181 SEVASSSVAP SSSEVVSSSV ASSSSEVASS SVAPSSSEVV SSSVAPSSSE VVSSSVASSS 240
  241 SEVASSSVAP SSSEVVSSSV ASSTSEATSS SAVTSSSAVS SSTESVSSSS VSSSSAVSSS 300
  301 EAVSSSPVSS VVSSSAGPAS SSVAPYNSTI ASSSSTAQTS ISTIAPYNST TTTTPASSAS 360
  361 SVIISTRNGT TVTETDNTLV TKETTVCDYS STSAVPASTT GYNNSTKVST ATICSTCKEG 420
  421 TSTATDFSTL KTTVTVCDSA CQAKKSATVV SVQSKTTGIV EQTENGAAKA VIGMGAGALA 480
  481 AVAAMLL

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	487	0.98