YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRE7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.19
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.79
Transmembrane Helix	46	65	0.84
Non-Cytoplasmic	66	86	0.66
Transmembrane Helix	87	103	0.26
Cytoplasmic	104	111	0.46
Transmembrane Helix	112	138	0.79
Non-Cytoplasmic	139	156	0.50
Transmembrane Helix	157	182	0.78
Cytoplasmic	183	194	0.44
Transmembrane Helix	195	215	0.92
Non-Cytoplasmic	216	236	0.50
Transmembrane Helix	237	259	0.79
Cytoplasmic	260	266	0.52
Transmembrane Helix	267	287	0.89
Non-Cytoplasmic	288	292	0.56
Transmembrane Helix	293	313	0.90
Cytoplasmic	314	425	0.58
Transmembrane Helix	426	441	0.19
Non-Cytoplasmic	442	629	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEERDLVLS NGIHCIADIH SELYARLKKE SQAATPWVYQ KQYGKFVTYF VAVIIFLSLI  60
   61 KKLAFMYYDS SEEFLPEKKN SPTTPSVFLA RIMTKLVAFN RYICYRKFPT LIFSYLGIPT 120
  121 SVGTFLVVMA TTLYTLLYCF VPHPFYRPCA GFGSPPLSVR AGIMAISLVP FVFSLSGKIN 180
  181 VIGWLVGLSY EKINIYHQWA SILCLFFSWV HVIPFLRQAR HEGGYERMHQ RWKASDMWRS 240
  241 GVPPILFLNL LWLSSLPIAR RHFYEIFLQL HWILAVGFYI SLFYHVYPEL NSHMYLVATI 300
  301 VVWFAQLFYR LAVKGYLRPG RSFMASTIAN VSIVGEGCVE LIVKDVEMAY SPGQHIFVRT 360
  361 IDKGIISNHP FSIFPSAKYP GGIKMLIRAQ KGFSKRLYES NDDMKKILID GPYGGIERDI 420
  421 RSFTNVYLIC SGSGISTCLP FLQKYGPILH KTNLEVITLD WVVRHREDIS WIRDEMCTLS 480
  481 NNLRQLFLDG KIVVRIYVCS DSTVPGIIKT FPQTIDTASD QSDLAKREKD TEFGQDDTES 540
  541 NSTFDKSNNE YKGLITIIPS KPDLNQVIND YQIGFRNCFI CSGSDSLRYT VGNSVAVYRP 600
  601 RFFLTKMSKS AIYTARVLAT SRKQMASTM