YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BSC6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.96
Transmembrane Helix	76	93	0.74
Non-Cytoplasmic	94	110	0.63
Transmembrane Helix	111	131	0.73
Cytoplasmic	132	140	0.88
Transmembrane Helix	141	164	0.86
Non-Cytoplasmic	165	168	0.69
Transmembrane Helix	169	194	0.79
Cytoplasmic	195	203	0.79
Transmembrane Helix	204	225	0.88
Non-Cytoplasmic	226	230	0.80
Transmembrane Helix	231	253	0.89
Cytoplasmic	254	302	0.96
Transmembrane Helix	303	325	0.84
Non-Cytoplasmic	326	336	0.88
Transmembrane Helix	337	358	0.88
Cytoplasmic	359	373	0.80
Transmembrane Helix	374	392	0.95
Non-Cytoplasmic	393	399	0.68
Transmembrane Helix	400	421	0.91
Cytoplasmic	422	432	0.83
Transmembrane Helix	433	456	0.89
Non-Cytoplasmic	457	464	0.72
Transmembrane Helix	465	486	0.90
Cytoplasmic	487	497	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASSVPPKV DDYGMYTTEI SHHNPIELKN LLSSSDSRRN SQDEDSLPNN TNLIKEIDWQ  60
   61 GEKVKTYPLN YQTVPLVKLQ VIACLIMFVV FGMNDQTVGA LLPTLIEYYH ISRVDVSNVF 120
  121 IVQLCGYVMA SLSKERLNKH FGMRGGMLLA AGLCIVFLII LATAPSSFYV CMFCGLPLGL 180
  181 GIGILDSTGN VLMGSLLVHK NELMGIMHGL YGAAAMVTPP LVSYFVEWGH WSLFFLIPLF 240
  241 FSIIGMIVIF PAFKFETASK YDYLCSVENK ESNNDVEEAG DNSLMESTKA SPGFFELLRN 300
  301 PAIFLYSLYL FLYLGAEITT GSWFFSYLLE TKSSNKVAMS YIAASFWTGL TVGRLCLGFV 360
  361 TERFFENEYK ASKAYAFLTL SSYTLFVLVG LINSSSVFYF VVLFFVVFCC GTFIGPLFPN 420
  421 ASIVALQVLP KRLHVSGVGV AVAVGGCGGA AIPYLAGVIA HTVGIQYIPL LCWIMVALFT 480
  481 LEWTLYPKFI KGHEEYF