YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAS4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVFSSTFIF LILELVVLCE ASVHTIQIKD KHFVDTVTGK PFFIKGVDYQ PGGSSDVSEK  60
   61 QDPLSNPDAC ARDILLFQEL GINTVRIYSI NPDLNHDACM TMLAMAGIYL ILDVNSPLQN 120
  121 QHLNRYEPWT TYNEVYLEHV FKVVEQFSHY NNTLGFFAGN EIVNDKRSAQ YSPAYVKELI 180
  181 GTMKNYISAH SPRTIPVGYS AADDLNYRVS LSEYLECKDD DKPENSVDFY GVNSYQWCGQ 240
  241 QTMQTSGYDT LVDAYRSYSK PVFFSEFGCN KVLPRQFQEI GYLFSEEMYS VFCGGLVYEF 300
  301 SQEDNNYGLV EYQEDDSVQL LADFEKLKSH YQNIEFPSMK TLKETVQMEE TPSCAEDYEN 360
  361 LKIESKIAKN LGSSLIKKGV KVEKGKYIDI HEDQLSTNVT ILDKHGDRWN GPKKIEIRQS 420
  421 LTLADLEGEE QEDADEDKDD LKRKHRNSAS ISGPLLPLGL CLLFFTFSLF F

Type	Start	End	Confidence
Signal Peptide	1	21	0.91
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	450	0.94
Transmembrane Helix	451	470	0.70
Cytoplasmic	471	471	0.68