YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMF1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.98
Transmembrane Helix	74	91	0.93
Non-Cytoplasmic	92	107	0.82
Transmembrane Helix	108	129	0.90
Cytoplasmic	130	149	0.87
Transmembrane Helix	150	172	0.87
Non-Cytoplasmic	173	183	0.64
Transmembrane Helix	184	204	0.90
Cytoplasmic	205	215	0.85
Transmembrane Helix	216	239	0.89
Non-Cytoplasmic	240	262	0.94
Transmembrane Helix	263	282	0.95
Cytoplasmic	283	344	0.96
Transmembrane Helix	345	368	0.88
Non-Cytoplasmic	369	392	0.92
Transmembrane Helix	393	415	0.89
Cytoplasmic	416	435	0.88
Transmembrane Helix	436	457	0.91
Non-Cytoplasmic	458	463	0.79
Transmembrane Helix	464	485	0.91
Cytoplasmic	486	542	0.97
Transmembrane Helix	543	564	0.92
Non-Cytoplasmic	565	575	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVGPSHAA VAVDASEARK RNISEEVFEL RDKKDSTVVI EGEAPVRTFT SSSSNHERED  60
   61 TYVSKRQVMR DIFAKYLKFI GPGLMVSVAY IDPGNYSTAV DAGASNQFSL LCIILLSNFI 120
  121 AIFLQCLCIK LGSVTGLDLS RACREYLPRW LNWTLYFFAE CAVIATDIAE VIGTAIALNI 180
  181 LIKVPLPAGV AITVVDVFLI MFTYKPGASS IRFIRIFECF VAVLVVGVCI CFAIELAYIP 240
  241 KSTSVKQVFR GFVPSAQMFD HNGIYTAISI LGATVMPHSL FLGSALVQPR LLDYDVKHGN 300
  301 YTVSEEQDKV KKSKSTEEIM EEKYFNYRPT NAAIKYCMKY SMVELSITLF TLALFVNCAI 360
  361 LVVAGSTLYN SPEADGADLF TIHELLSRNL APAAGTIFML ALLLSGQSAG VVCTMSGQIV 420
  421 SEGHINWKLQ PWQRRLATRC ISIIPCLVIS ICIGREALSK ALNASQVVLS IVLPFLVAPL 480
  481 IFFTCKKSIM KTEITVDHTE EDSHNHQNNN DRSAGSVIEQ DGSSGMEIEN GKDVKIVYMA 540
  541 NNWIITVIAI IVWLFLSLLN VYAIVQLGMS HGDIS