YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCH4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.97
Transmembrane Helix	97	119	0.91
Non-Cytoplasmic	120	135	0.87
Transmembrane Helix	136	158	0.87
Cytoplasmic	159	163	0.83
Transmembrane Helix	164	183	0.94
Non-Cytoplasmic	184	190	0.79
Transmembrane Helix	191	214	0.91
Cytoplasmic	215	223	0.78
Transmembrane Helix	224	244	0.94
Non-Cytoplasmic	245	254	0.79
Transmembrane Helix	255	275	0.94
Cytoplasmic	276	310	0.94
Transmembrane Helix	311	333	0.89
Non-Cytoplasmic	334	344	0.84
Transmembrane Helix	345	365	0.89
Cytoplasmic	366	374	0.83
Transmembrane Helix	375	396	0.90
Non-Cytoplasmic	397	402	0.86
Transmembrane Helix	403	425	0.92
Cytoplasmic	426	440	0.81
Transmembrane Helix	441	461	0.93
Non-Cytoplasmic	462	470	0.80
Transmembrane Helix	471	493	0.88
Cytoplasmic	494	501	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNIPIIANS KRFLFSKDHE AQSTRDHDVE LETREGPSSG YNPNFNAADA ILKKNSDQVD  60
   61 LDVNKLTNVT SRVLNTPEAS LIYDDDREFP DGGLKAWLVV FGAFMGLVPV FGLINSLGAI 120
  121 ESYISKHQLA NISSSTISWI FSLYLAISFL SCILSGGYFD RNGSIGLMCT GTVIYAGGLF 180
  181 ALANCKSVWQ FILAFSVCSG LGTGILMTPL IGTVATWFLK RRGIATSIST MGGSIGGIVF 240
  241 PIMLRKLYKE VGFQWAIRIL SFICLTCLIC ASVLARERTK PVVQPFKSKA EVAKWYISSV 300
  301 FNWRYFLEGK FLFVAIGASF AESSLTSCAT YLASYSMTRG NTENVAYTMI TASNAVGILG 360
  361 RYIPGYFADK FIGRFNVEII TISMAALFNF VMWLPFGGNT KVLWAYVCLW GFSTGSILSL 420
  421 TPVCIGQISK TTDFGKRYAT VYLLQALVTI PVLPIGGTLI GKGTVANYNH FIIFNSALMA 480
  481 AGAACYIISR HICVGAKLCK F