YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WSC3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERVWFAKLT NKGTIKIGYI SFILLSLLCQ SLIGLVNADF NYEGCYSAAD IQSAGLSLKN  60
   61 SYIYQSVSYC QNQCPESAVV ALFNGSDCYC GNSVSFLTSL TKSTDSNCGT KCSGWPYQMC 120
  121 GGSSYMNVYV NAETFVSSVE SSSSKEGSST SYMPSTTSSL SSAQISSTTR RTSTDMKSSE 180
  181 MIATTVSTTS TTSSSTSSTT SSTTSSTTSS TTSSTTSSST SSTTSSTTSS TTSSTTSSTT 240
  241 SSTTSSTTSS TTSSTTSIFS VTSSSSSITL SSSEHTTVDS RTSSPSSTLV PVSSSSSTLS 300
  301 TPKVTSMTPS TSSTIPIVTS VELVTSVVTK AIVSTSDQHQ ETIFVTRTSV VERSSEVATA 360
  361 TAAASNNRSN STSKQRLSGG AIAGIVIGVV FGVIFIILIL LFLIWRRRKS HDQLDLEETK 420
  421 HYQPYSFGDE DANPIGPPPS SGTTNWMRHS RGNTAGSIGT SNMYGFSMSN GANYSSPSSN 480
  481 TSGSIINNLA GLQDATVQKQ NLPSTVFEEA NTLNSANERF SANSLPDMMM SGPLQVVNPD 540
  541 NPDNPELSST VSHNRA

Type	Start	End	Confidence
Signal Peptide	1	38	0.92
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	378	0.99
Transmembrane Helix	379	404	0.91
Cytoplasmic	405	556	0.93