YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MAM3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLPLRSRS RSGAPHWVYI ILYHIFTIPK IYSLPLLSGS HVLNSRDVAD SGHSVGDEAS  60
   61 VTTYYIISII LVLLGGVFAG LTLGLMGQDE VYLKVISTSG SNSEKKLAKR VLDLISRGKH 120
  121 WVLVTLLLSN VITNETLPIV LDRCLGGGWQ AVVSSTILIV IFGEIIPQSV CVKYGLQVGA 180
  181 FFCPFVLVLM YLMYPVAYPI ATLLDYMLGE DHGTMYKKSG LKTLVTLHRT MGVERLTKDE 240
  241 VTIISAVLDL KAKRVEEIMT PIENVFTMSA DTILDDKTVE KIFNSGFSRI PIFLPNEPNN 300
  301 FIGMLLVRVL ISYDPDDCLP ISHFPLATLP ETSPNTSCLN ILNYFQEGKA HMCVVSKEPG 360
  361 SSHGAIGVLT LEDVIEELIG EEIVDESDVF VDMHQHIMRQ QPGPLSKRHI TSYLHHLYTS 420
  421 SHKEHKAADQ ADESSPLLSP SNSNHPSEHP QQDLNNKSWK QKSNDGYDRS NAVLSPTPQV 480
  481 TEHGTIIPSN LASNPLNVNK SFVTIKKPAN VPKIITTHTP HSSKEPSPAP HSNDKSLSAE 540
  541 EQQLLSDHAE LSRQAVLHTQ RSGQPTQVTT STKTTRNSPD SISIPNSGAN HGNENQNVTI 600
  601 STSYQNTKNG IVESVITVKG VPKTIIGPAK DWDESKSEYG NENINQENSN RSDDRESSSS 660
  661 NASLFSSIKN KFKNENANNN DRSNFTDSLS RTSNYDANGS SSTIKR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	34	0.90
Non-Cytoplasmic	35	62	0.88
Transmembrane Helix	63	85	0.93
Cytoplasmic	86	119	0.93
Transmembrane Helix	120	139	0.83
Non-Cytoplasmic	140	146	0.71
Transmembrane Helix	147	166	0.89
Cytoplasmic	167	173	0.75
Transmembrane Helix	174	198	0.83
Non-Cytoplasmic	199	706	0.96