YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AIM39
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGLCKKHFP SNKIQVQERN KALKPKKSGS EHKTKQLFPV FNCKKKEKGV MIRFAILRNA  60
   61 NTSLLSARSI CLFTQAPTYC HVRLNTLNKS ITTKRNSLTE SKRHVHDGKH FFTTPHQQQQ 120
  121 TKLGEIEEGH SPNIKGEDLR SIGQAITHQR NKRRKQIWSA IFGGIFGVIL GYSLIYRVIY 180
  181 LKEQSFLPLF PSSKIRKLST RDLKKVDVNQ VQKLSKLRVL EILSGHDMIK EQYGVPLLDK 240
  241 DGNSPTLNEF SMWCEDQDPC VTGIVMEPDD KRDSSHTWYR IPFVCKWRIT HRPISIRGTI 300
  301 DDLLNRIGLE TADLFEIISP ERVYGSFKYE YPLQGDSHAL HLWFHGEIEL DDDSLIVYNG 360
  361 KYHVDVKLQE IDLFRREKNG QLIQYVLYKN EAGDK

Type	Start	End	Confidence
Cytoplasmic	1	156	0.98
Transmembrane Helix	157	180	0.91
Non-Cytoplasmic	181	395	0.98