YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PFA4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKLRWPWL GIAIPTFLIS FIGYGAHYFI LSNFLSVPKQ ITFEFCLSMI WLSYYLAICT  60
   61 NPGRPLPNYK PPPDIWRNFC KKCQSYKPER SHHCKTCNQC VLMMDHHCPW TMNCVGFANY 120
  121 PHFLRFLFWI IVTTSVLFCI QAKRIYFIWQ QRHLPGYFFK KSELIFLTIS SPLNSFVLLT 180
  181 ITILFLRCLF NQILNGRSQI ESWDMDRLES LFNSGRLTQK LIDNTWRIYP ESRSFQNKKD 240
  241 AEEHLTKKRP RFDELVNFPY DFDLYTNALL YLGPIHLWLW PYGVPTGDGN NFPKNGISKY 300
  301 EANSSLEDHI LSLPWPPDGG KTNTVFNHGS STIEMRNESG EQLIRTRLPQ NGRHASREKW 360
  361 YNDWGESLDD FGVDVDME

Type	Start	End	Confidence
Cytoplasmic	1	6	0.67
Transmembrane Helix	7	31	0.86
Non-Cytoplasmic	32	125	0.64
Transmembrane Helix	126	147	0.89
Cytoplasmic	148	163	0.73
Transmembrane Helix	164	186	0.91
Non-Cytoplasmic	187	378	0.74