YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRE4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.94
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	156	0.97
Transmembrane Helix	157	180	0.89
Cytoplasmic	181	228	0.91
Transmembrane Helix	229	247	0.73
Non-Cytoplasmic	248	267	0.70
Transmembrane Helix	268	294	0.76
Cytoplasmic	295	310	0.66
Transmembrane Helix	311	333	0.82
Non-Cytoplasmic	334	343	0.69
Transmembrane Helix	344	367	0.88
Cytoplasmic	368	374	0.57
Transmembrane Helix	375	391	0.92
Non-Cytoplasmic	392	399	0.52
Transmembrane Helix	400	418	0.57
Cytoplasmic	419	719	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVHIISFL LFFQLSAAKA PPSKTSLINT HERRSIYSCY VGLRKETWGF NGSAICRYEP  60
   61 AIQSMLYCLY EDTHEKGYSN KTLEKGFEEM RQFCYTPKFL NMTDAEFYTS LDNGTYYIQD 120
  121 QPKAGINITY PIRLNTTLRK AYYDAYYGYY YNHDIPYYFG GIICAYFVGV MLLAGLIRFL 180
  181 NYTPIKKIMF QQKLVNYVRG YTTLPTLYEK HAEPFSYLKV ITGYLPTRFE TLVILGYLIL 240
  241 HTIFMAYKYQ YDPYHIIFAA HRAEVAHFVA YRSGILSFAH LPLIVLFAGR NNFLQLISGL 300
  301 KHTSFIVFHK WLGRMMFLDA IIHAAGFTNY YLYYKKWNTV RLRVYWKFGI ATTCLAGMLI 360
  361 FFSIAAFRRH YYETFMALHI VFAALFLYTC WEHVTNFSGI EWIYAAIAIW GVDRIVRITR 420
  421 IALLGFPKAD LQLVGSDLVR VTVKKPKKFW KAKPGQYVFV SFLRPLCFWQ SHPFTVMDSC 480
  481 VNDRELVIVL KAKKGVTKLV RNFVERKGGK ASMRLAIEGP YGSKSTAHRF DNVLLLAGGS 540
  541 GLPGPISHAL ELGKTTAASG KNFVQLVIAV RGLDMLNACK KELMALKGLN VQVHIYNSKQ 600
  601 ELASAEKISS NEVKNGETTA EKAPSSLSNS EKAPSESENT ELPLSLNDTS ISDLEFATFH 660
  661 VGRPNVEEIL NESVNHSGSL AVVCCGPPIF VDTARNQTAK AVIRNPSRMI EYLEEYQAW