YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BIO5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.93
Transmembrane Helix	45	70	0.84
Non-Cytoplasmic	71	77	0.71
Transmembrane Helix	78	104	0.82
Cytoplasmic	105	166	0.92
Transmembrane Helix	167	192	0.84
Non-Cytoplasmic	193	203	0.80
Transmembrane Helix	204	224	0.88
Cytoplasmic	225	233	0.75
Transmembrane Helix	234	253	0.94
Non-Cytoplasmic	254	279	0.85
Transmembrane Helix	280	299	0.88
Cytoplasmic	300	320	0.80
Transmembrane Helix	321	344	0.88
Non-Cytoplasmic	345	370	0.93
Transmembrane Helix	371	392	0.93
Cytoplasmic	393	431	0.96
Transmembrane Helix	432	452	0.91
Non-Cytoplasmic	453	457	0.77
Transmembrane Helix	458	482	0.91
Cytoplasmic	483	508	0.97
Transmembrane Helix	509	531	0.90
Non-Cytoplasmic	532	539	0.80
Transmembrane Helix	540	560	0.91
Cytoplasmic	561	561	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRVGAVFLF VYERNFFLSI VPDRHRTEIR MSSSERSEVK FDKHFNWWSL LGIAFSLSCS  60
   61 WVGISASMAV GIASGGPLLI IYGLIIAAFF SLMCGISLGD FAAILPNSSG GSFWVLKMLE 120
  121 QESVTLKTPE YEDPSDDDEE VFLENYCQTF NVEVSSKFQK VSSMVVGLLN YFGAIFTTAS 180
  181 ICSSLSMSCI GIHKLLHPDY ELKHWHVFVG YECINAVLTL FNIYSTPLPY ISQFGLYTSL 240
  241 LSFAMTFIIC IVSRSDNTVD PWPKASNIFG SFDNQTGWNS SGMAFVVGLV NPIWAFVGID 300
  301 SATHMIDEVG YSKSRFLVPK VIITTIIVGF VTSFIYCVGL FFCITDQTAV VESILPIVEI 360
  361 FYQATGNRNL SVFLQCMCIT TGFVSGIASG TWQSRILQSF GKSYAPFYKE GSLGNKSLKK 420
  421 LAVLTPGFKS PLYAHFLSQI CVTIIGCIFM GSSTAFNAII TACITLLLMS YAVPSFIFLF 480
  481 VIKKEKFIHR IESDVNCVSR PNRRRMSMIP HIICILWTLF CLVFLSFPYT LPVTAGNMNY 540
  541 TSVVYAVVFC IISIVVFPTC I