YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG12
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.53
Transmembrane Helix	56	77	0.69
Non-Cytoplasmic	78	93	0.37
Transmembrane Helix	94	111	0.47
Cytoplasmic	112	134	0.55
Transmembrane Helix	135	158	0.81
Non-Cytoplasmic	159	180	0.46
Transmembrane Helix	181	215	0.70
Cytoplasmic	216	224	0.71
Transmembrane Helix	225	248	0.82
Non-Cytoplasmic	249	280	0.86
Transmembrane Helix	281	300	0.84
Cytoplasmic	301	307	0.75
Transmembrane Helix	308	325	0.88
Non-Cytoplasmic	326	331	0.75
Transmembrane Helix	332	352	0.95
Cytoplasmic	353	362	0.77
Transmembrane Helix	363	385	0.93
Non-Cytoplasmic	386	551	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWSVLDTVL LTVISFHLIQ APFTKVEESF NIQAIHDILT YSVFDISQYD HLKFPGVVPR  60
   61 TFVGAVIIAM LSRPYLYLSS LIQTSRPTSI DVQLVVRGIV GLTNGLSFIY LKNCLQDMFD 120
  121 EITEKKKEEN EDKDIYIYDS AGTWFLLFLI GSFHLMFYST RTLPNFVMTL PLTNVALGWV 180
  181 LLGRYNAAIF LSALVAIVFR LEVSALSAGI ALFSVIFKKI SLFDAIKFGI FGLGLGSAIS 240
  241 ITVDSYFWQE WCLPEVDGFL FNVVAGYASK WGVEPVTAYF THYLRMMFMP PTVLLLNYFG 300
  301 YKLAPAKLKI VSLASLFHII VLSFQPHKEW RFIIYAVPSI MLLGATGAAH LWENMKVKKI 360
  361 TNVLCLAILP LSIMTSFFIS MAFLYISRMN YPGGEALTSF NDMIVEKNIT NATVHISIPP 420
  421 CMTGVTLFGE LNYGVYGINY DKTENTTLLQ EMWPSFDFLI THEPTASQLP FENKTTNHWE 480
  481 LVNTTKMFTG FDPTYIKNFV FQERVNVLSL LKQIIFDKTP TVFLKELTAN SIVKSDVFFT 540
  541 YKRIKQDEKT D