YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190408984
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLFGDKTP TDDANAAVGG QDTTKPKELS LKQSLGFEPN INNIISGPGG MHVDTARLHP  60
   61 LAGLDKGVEY LDLEEEQLSS LEGSQGLIPS RGWTDDLCYG TGAVYLLGLG IGGFSGMMQG 120
  121 LQNIPPNSPG KLQLNTVLNH ITKRGPFLGN NAGILALSYN IINSTIDALR GKHDTAGSIG 180
  181 AGALTGALFK SSKGLKPMGY SSAMVAAACA VWCSVKKRLL EK

Type	Start	End	Confidence
Cytoplasmic	1	96	0.88
Transmembrane Helix	97	118	0.81
Non-Cytoplasmic	119	197	0.79
Transmembrane Helix	198	215	0.72
Cytoplasmic	216	222	0.67