YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.99
Transmembrane Helix	57	78	0.91
Non-Cytoplasmic	79	115	0.95
Transmembrane Helix	116	137	0.92
Cytoplasmic	138	146	0.87
Transmembrane Helix	147	167	0.93
Non-Cytoplasmic	168	173	0.81
Transmembrane Helix	174	195	0.92
Cytoplasmic	196	207	0.86
Transmembrane Helix	208	229	0.89
Non-Cytoplasmic	230	240	0.92
Transmembrane Helix	241	263	0.88
Cytoplasmic	264	337	0.99
Transmembrane Helix	338	361	0.86
Non-Cytoplasmic	362	376	0.92
Transmembrane Helix	377	398	0.94
Cytoplasmic	399	405	0.91
Transmembrane Helix	406	427	0.91
Non-Cytoplasmic	428	435	0.87
Transmembrane Helix	436	461	0.90
Cytoplasmic	462	471	0.87
Transmembrane Helix	472	495	0.86
Non-Cytoplasmic	496	502	0.82
Transmembrane Helix	503	522	0.96
Cytoplasmic	523	540	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQIPYQHS SGYISHFHNN ELDAGRGRDY NVTIKYLDDK EENIEGQAAK ISHNASLHIP  60
   61 VLLCLVISLG GFIFGWDIGT IGGMTNMVSF QEKFGTTNII HDDETIFVST KKLTDLQIGL 120
  121 IISIFNISCG VGALTLSKIG DWIGRKGGIW FALVVYCIGI TIQILSYGRW YFLTLGRAVT 180
  181 GIGVGVTTVL VPMFLSENSP LKIRGSMVST YQLIVTFGIL MGNILNFICE RCYKDPTQNI 240
  241 AWQLPLFLGY IWAIIIGMSL VYVPESPQYL AKIKNDVPSA KYSFARMNGI PATDSMVIEF 300
  301 IDDLLENNYN NEETNNESKK QSLVKRNTFE FIMGKPKLWL RLIIGMMIMA FQQLSGINYF 360
  361 FYYGTSVFKG VGIKDPYITS IILSSVNFLS TILGIYYVEK WGHKTCLLYG STNLLFYMMT 420
  421 YATVGTFGRE TDFSNIVLII VTCCFIFWFA ITLGPVTFVL VSELFPLRTR AISMAICTFI 480
  481 NWMFNFLISL LTPMIVSKID FKLGYIFAAC LLALIIFSWI LVPETRKKNE QEINKIFEPE 540
  541