YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIM21
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLWRHSPEE LAAYNSCHPM KLGSGVLIQL PLYDNSAVYA EDITFRSFCC ERVPVYVSTV  60
   61 LRNSSPYRYL DEVINDWQKF IQVSDYVGGS AEYAIYAVIL SITSNFVITV FLTVICCINI 120
  121 SGRAYKRILQ LLRIASLLAS LNLTIFITKV LRRLEKEHNV YGVVRAHSIM HIFSDDMTFV 180
  181 VLDFLATLMF QFCQVGIVIR LFQRAQEKRI IFFIGVILTI TANILWVIPP FANHTTKHRN 240
  241 DWQILRPFVY LFRIAIATSY ASIVIYHIWQ KKKLWFKFNQ MGLLTLLTIL VVLLLPGFFL 300
  301 ADVSNLWISE LGEVFNTTCY VTSTVITWEW LDRLNVLERK EEAQSILGRP IFEEEQQDYR 360
  361 FAKYALRVQN ALTRRESQDA STDRHDTSSN SEVCDLQTIS RYDPEDQISV GRSIDRMHFN 420
  421 DRGTYKDVAL KKLGYARDKI LYFTDQIVQK SVGHNNSSSS KNEKTKQRKA MVRKRLGLDK 480
  481 PGIYIYSTKD VVFNSDEDDD ENAEDEDDDE YEVGSEGNNN SSATFTSDHI GHI

Type	Start	End	Confidence
Non-Cytoplasmic	1	93	0.82
Transmembrane Helix	94	118	0.87
Cytoplasmic	119	128	0.82
Transmembrane Helix	129	151	0.86
Non-Cytoplasmic	152	178	0.92
Transmembrane Helix	179	202	0.86
Cytoplasmic	203	209	0.94
Transmembrane Helix	210	229	0.96
Non-Cytoplasmic	230	248	0.89
Transmembrane Helix	249	269	0.95
Cytoplasmic	270	280	0.87
Transmembrane Helix	281	301	0.93
Non-Cytoplasmic	302	533	0.82