YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YTP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	29	0.81
Non-Cytoplasmic	30	56	0.78
Transmembrane Helix	57	79	0.88
Cytoplasmic	80	85	0.62
Transmembrane Helix	86	104	0.77
Non-Cytoplasmic	105	121	0.81
Transmembrane Helix	122	145	0.90
Cytoplasmic	146	167	0.80
Transmembrane Helix	168	189	0.89
Non-Cytoplasmic	190	200	0.75
Transmembrane Helix	201	226	0.84
Cytoplasmic	227	236	0.78
Transmembrane Helix	237	255	0.79
Non-Cytoplasmic	256	266	0.82
Transmembrane Helix	267	286	0.92
Cytoplasmic	287	293	0.81
Transmembrane Helix	294	314	0.88
Non-Cytoplasmic	315	322	0.69
Transmembrane Helix	323	343	0.89
Cytoplasmic	344	353	0.90
Transmembrane Helix	354	373	0.94
Non-Cytoplasmic	374	389	0.91
Transmembrane Helix	390	415	0.86
Cytoplasmic	416	459	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAANKNIVF GFSRSISAIL LICFFFEKVC GDMEHDMGMD DTSGYTRPEI VQAGSKSFHW  60
   61 LCTLGFLLLL PSVVTCLSFA GRIYSATLLQ CTCAVYAFLE AAVLRFQDND GVENRTSRGT 120
  121 AWFLVGLTWI TLFFGGLAGG TGFLVKSKRL QTFISNAGEK RLSYIHRGLS FLTVLTGWVK 180
  181 VCLAPVALFG FCREAHTGQC IAHGIMGSAF VLYGFIYVLV LVIPWIRSAQ TSYSQDYVDS 240
  241 WVMCIWGVVN TFTEHRWGRE GWSVHDYQHT FMGIIWWTGG ILGIFLSRNG RRTFVPSLII 300
  301 IFTGWAMSEH AQHLIISTKV HNMFGLVLMC GGALRIIEIS FLLRDKRTLD KIHSFQYLAP 360
  361 FCLVCSGLLF MGANEEQLIL VLRLGGDHSA YVLIIVSGAF LVYFWMIACL EFYLYLLEKG 420
  421 KQGFLPKSYE LEEENNNVSF ELDNISNEDV DEDTTPFNV