YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MEP2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.96
Transmembrane Helix	33	55	0.91
Cytoplasmic	56	62	0.88
Transmembrane Helix	63	83	0.94
Non-Cytoplasmic	84	123	0.93
Transmembrane Helix	124	144	0.92
Cytoplasmic	145	152	0.82
Transmembrane Helix	153	175	0.89
Non-Cytoplasmic	176	186	0.88
Transmembrane Helix	187	208	0.93
Cytoplasmic	209	225	0.93
Transmembrane Helix	226	245	0.92
Non-Cytoplasmic	246	256	0.79
Transmembrane Helix	257	278	0.93
Cytoplasmic	279	286	0.87
Transmembrane Helix	287	307	0.92
Non-Cytoplasmic	308	311	0.71
Transmembrane Helix	312	332	0.90
Cytoplasmic	333	343	0.83
Transmembrane Helix	344	364	0.93
Non-Cytoplasmic	365	391	0.89
Transmembrane Helix	392	414	0.93
Cytoplasmic	415	499	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNFTGTPT GEGTGGNSLT TDLNTQFDLA NMGWIGVASA GVWIMVPGIG LLYSGLSRKK  60
   61 HALSLLWASM MASAVCIFQW FFWGYSLAFS HNTRGNGFIG TLEFFGFRNV LGAPSSVSSL 120
  121 PDILFAVYQG MFAAVTGALM LGGACERARL FPMMVFLFLW MTIVYCPIAC WVWNAEGWLV 180
  181 KLGSLDYAGG LCVHLTSGHG GLVYALILGK RNDPVTRKGM PKYKPHSVTS VVLGTVFLWF 240
  241 GWMFFNGGSA GNATIRAWYS IMSTNLAAAC GGLTWMVIDY FRCGRKWTTV GLCSGIIAGL 300
  301 VGITPAAGFV PIWSAVVIGV VTGAGCNLAV DLKSLLRIDD GLDCYSIHGV GGCIGSVLTG 360
  361 IFAADYVNAT AGSYISPIDG GWINHHYKQV GYQLAGICAA LAWTVTVTSI LLLTMNAIPF 420
  421 LKLRLSADEE ELGTDAAQIG EFTYEESTAY IPEPIRSKTS AQMPPPHENI DDKIVGNTDA 480
  481 EKNSTPSDAS STKNTDHIV