YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIARIVKHL YQSDDRSFLS NHVLRPFWRK FATIFPLWMA PNLVTLLGFC FIIFNVLTTL  60
   61 YYDPYFDQES PRWTYFSYAI GLFLYQTFDA CDGMHARRTG QQGPLGELFD HCIDSINTTL 120
  121 SMIPVCSMTG MGYTYMTIFS QFAILCSFYL STWEEYHTHK LYLAEFCGPV EGIIVLCISF 180
  181 IAVGIYGPQT IWHTKVAQFS WQDFVFDVET VHLMYAFCTG ALIFNIVTAH TNVVRYYESQ 240
  241 STKSATPSKT AENISKAVNG LLPFFAYFSS IFTLVLIQPS FISLALILSI GFSVAFVVGR 300
  301 MIIAHLTMQP FPMVNFPFLI PTIQLVLYAF MVYVLDYQKG SIVSALVWMG LGLTLAIHGM 360
  361 FINDIIYDIT TFLDIYALSI KHPKEI

Type	Start	End	Confidence
Cytoplasmic	1	33	0.94
Transmembrane Helix	34	57	0.89
Non-Cytoplasmic	58	130	0.85
Transmembrane Helix	131	153	0.86
Cytoplasmic	154	165	0.79
Transmembrane Helix	166	186	0.86
Non-Cytoplasmic	187	210	0.85
Transmembrane Helix	211	234	0.89
Cytoplasmic	235	254	0.92
Transmembrane Helix	255	277	0.84
Non-Cytoplasmic	278	281	0.76
Transmembrane Helix	282	304	0.90
Cytoplasmic	305	312	0.81
Transmembrane Helix	313	334	0.90
Non-Cytoplasmic	335	341	0.75
Transmembrane Helix	342	362	0.88
Cytoplasmic	363	386	0.81