YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FKS3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	333	0.60
Transmembrane Helix	334	356	0.60
Non-Cytoplasmic	357	374	0.81
Transmembrane Helix	375	399	0.86
Cytoplasmic	400	413	0.75
Transmembrane Helix	414	434	0.93
Non-Cytoplasmic	435	443	0.73
Transmembrane Helix	444	464	0.90
Cytoplasmic	465	502	0.75
Transmembrane Helix	503	525	0.53
Non-Cytoplasmic	526	577	0.51
Transmembrane Helix	578	604	0.83
Cytoplasmic	605	1208	0.80
Transmembrane Helix	1209	1233	0.74
Non-Cytoplasmic	1234	1264	0.83
Transmembrane Helix	1265	1288	0.89
Cytoplasmic	1289	1302	0.79
Transmembrane Helix	1303	1324	0.70
Non-Cytoplasmic	1325	1331	0.51
Transmembrane Helix	1332	1346	0.38
Cytoplasmic	1347	1357	0.49
Transmembrane Helix	1358	1378	0.89
Non-Cytoplasmic	1379	1384	0.52
Transmembrane Helix	1385	1404	0.89
Cytoplasmic	1405	1472	0.75
Transmembrane Helix	1473	1495	0.88
Non-Cytoplasmic	1496	1512	0.73
Transmembrane Helix	1513	1537	0.86
Cytoplasmic	1538	1548	0.57
Transmembrane Helix	1549	1567	0.90
Non-Cytoplasmic	1568	1582	0.64
Transmembrane Helix	1583	1603	0.89
Cytoplasmic	1604	1623	0.69
Transmembrane Helix	1624	1638	0.54
Non-Cytoplasmic	1639	1654	0.47
Transmembrane Helix	1655	1687	0.73
Cytoplasmic	1688	1711	0.84
Transmembrane Helix	1712	1734	0.93
Non-Cytoplasmic	1735	1785	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFMSPKFSL TDVEYPAWCQ DDEVPITMQE IREIFVELMD KFGFQKSSME NMYQHLMGQL  60
   61 DSRASRTGAQ NALVSLHVSY IGGEHANYRK WYFAAQLDLD EEIGFQNMRL HGKARQRNVK 120
  121 MAKKRGVSIK EQIKQWNEKE QEFINNHPKI TLTQEQLEDQ TNLKSADYKW KLKMKKLTPE 180
  181 NMIRQLALYL LCWGEANQVR FAPECLCFIF KCALDYDIST SSSEKTVKSP EYSYLNDVIT 240
  241 PLYEFLRGQV YKKDAKGNWK RREKDHKNII GYDDINQLFW YPEGFERIIL NNGERLVDKP 300
  301 LEERYLYFKD VAWSKVFYKT YRETRSWKHC FTNFNRFWII HFAPFWFFTT FNSPTLYTKN 360
  361 YIQLLNNQPT PQVRLSVIAF GGTIACLVQI LATVFEWGFV PREWPGAQHL SSRMIGLLFC 420
  421 LAINLGPSVY VLGFFEWDVH SKSAYIVSIV QLIIAFLTTF FFAVRPLGGL FRPYLNKDKK 480
  481 HRRYISSQTF TASFPKLTGR SKWFSYGLWV FVYLAKYIES YFFLTLSLRD PIRVLSIMDL 540
  541 SRCQGEYLLG PILCKWQAKI TLVLMLLSDL GLFFLDTYLW YIICNCIFSI VLSFSLGTSI 600
  601 LTPWKNVYSR LPKRIYSKIL ATSEMDVKFK AKILISQVWN AIVISMYREH LLSIEHLQRL 660
  661 LFQQVDSLMG DTRTLKSPTF FVAQDDSTFK SMEFFPSNSE AKRRISFFAQ SLATPISEPV 720
  721 PVDCMPTFTV LVPHYSEKIL LGLKEIIREE SPKSKITVLE YLKHLHPTEW ECFVKDTKLL 780
  781 SMEKSFLKEA ESSHDEDRLE IPDALYDPRS SPLSDHTESR KLPTEDDLIK EKINDLPFSY 840
  841 FGFNSSEPSY TLRTRIWASL RTQTLYRTLS GFMNYSKAIK LLYRIENPSL VSLYRGNNEA 900
  901 LENDLENMAS RKFRMVVAMQ RYAKFNKDEV EATELLLRAY PNMFISYLLE ELEQNESEKT 960
  961 YYSCLTNGYA EFDEESGLRK PIFKIRLSGN PILGDGKSDN QNHSIIFYRG EYIQVIDANQ1020
 1021 DNYLEECLKI RSVLSEFEEL ELNPTIPYIP GIEYEEEPPP IAIVGSREYI FSENIGVLGD1080
 1081 IAAGKEQTFG TLFARTLAEI GGKLHYGHPD FLNGIFMTTR GGLSKAQRGL HLNEDIYAGM1140
 1141 NAICRGGKIK HSDYYQCGKG RDLGFGSILN FTTKIGAGMG EQLLSREYYY LGTQLPMDRF1200
 1201 LSFFYAHPGF HLNNLFISFS VQLFFVLLLN LGALNHEIIA CFYDKDAPIT NLETPVGCYN1260
 1261 IQPALHWVSI FVLSIFIVFF IAFAPLLIQE VLEKGIWRAA SRFLHHLLSM APLFEVFVCQ1320
 1321 VYSNSLLMDL TFGGAKYIST GRGFAITRLD FFTLYSRFVN ISIYSGFQVF FMLLFAIISM1380
 1381 WQPALLWFWI TVISMCFAPF IFNPHQFAFM DFFIDYKTFI HWLFSGNTKY QKESWANFVK1440
 1441 SSRSRFTGYK SKTVDDISED SGHDSKKARF WNVFFAELFL PFCVFLFNFT AFSFINAQTG1500
 1501 VSDSTPTSAV FRLLLVTFLP IFLNSIVLFL LFWVSLFVVP GLSYCCKDAG AVIAFIAHTF1560
 1561 SVLVYLLDFE LMWFLQGWNF TRTLILLITC INMHLILFKV FTTIFLTREY KNNKAHLAWW1620
 1621 NGKWYNTGMG WSIILQPIRE YFVKIMESSY FAADFFLGHF LLFIQTPIIL LPFIDYWHTM1680
 1681 VLFWMNPRSI IAHKRILTRK QRALRSRIVS KYFSLYFVML GVLLFMLIAP FFAGDFVSSP1740
 1741 QELLEGTLFE GIFQPNNQNN NDTGPNAPST ILTTTPTLPT FRTVA