YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113675822, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.84
Transmembrane Helix	125	149	0.87
Non-Cytoplasmic	150	192	0.51
Transmembrane Helix	193	213	0.67
Cytoplasmic	214	223	0.73
Transmembrane Helix	224	243	0.82
Non-Cytoplasmic	244	250	0.76
Transmembrane Helix	251	272	0.93
Cytoplasmic	273	392	0.85
Transmembrane Helix	393	418	0.87
Non-Cytoplasmic	419	705	0.65
Transmembrane Helix	706	725	0.84
Cytoplasmic	726	737	0.60
Transmembrane Helix	738	760	0.77
Non-Cytoplasmic	761	775	0.75
Transmembrane Helix	776	799	0.75
Cytoplasmic	800	819	0.80
Transmembrane Helix	820	844	0.86
Non-Cytoplasmic	845	875	0.81
Transmembrane Helix	876	895	0.60
Cytoplasmic	896	904	0.54
Transmembrane Helix	905	929	0.88
Non-Cytoplasmic	930	1147	0.59
Transmembrane Helix	1148	1172	0.74
Cytoplasmic	1173	1187	0.55
Transmembrane Helix	1188	1204	0.63
Non-Cytoplasmic	1205	1218	0.71
Transmembrane Helix	1219	1242	0.79
Cytoplasmic	1243	1264	0.75
Transmembrane Helix	1265	1291	0.86
Non-Cytoplasmic	1292	1344	0.62
Transmembrane Helix	1345	1362	0.52
Cytoplasmic	1363	1384	0.76
Transmembrane Helix	1385	1406	0.92
Non-Cytoplasmic	1407	1467	0.83
Transmembrane Helix	1468	1487	0.89
Cytoplasmic	1488	1501	0.77
Transmembrane Helix	1502	1522	0.90
Non-Cytoplasmic	1523	1532	0.70
Transmembrane Helix	1533	1557	0.82
Cytoplasmic	1558	1576	0.80
Transmembrane Helix	1577	1598	0.70
Non-Cytoplasmic	1599	1599	0.52
Transmembrane Helix	1600	1622	0.80
Cytoplasmic	1623	1688	0.66
Transmembrane Helix	1689	1712	0.89
Non-Cytoplasmic	1713	1954	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAILFPPGP DSLHRFTRES LAGIEQRIAE EEARNAKRYQ EDRGDVEPPK PRADLEAGKQ  60
   61 LPRIFGDIPS ALVGVPLEDI DPFYFQNRRT FIVLNKGKAI FRFSATSALY IFSPFHPIRR 120
  121 ASIRILVHSL FSLFIMCTIL TNCCFMAMSE PAQWAKYVEY TFTGIYTFES LIKILARGFC 180
  181 IGPFTFLRDP WNWLDFSVIL MAYVTEFVDL GNVSALRTFR VLRALKTISV IPGLKTIVGA 240
  241 LIQSVKKLAD VMILTVFCLS VFALIGLQLF MGNLRQKCVR SASQCLNTTL PTYNNSTFIC 300
  301 NNRSWASLEE FFNNEDNFFK VEGAKDALIC GNASDAGKCP DGFECLKTGR NPNYGYTSFD 360
  361 TFGWAFLSLF RLMTQDYWEN LYHHTLRSAG KAYMVFFVVV IFLGSFYLVN LILAVVAMAY 420
  421 EEQNQATIAE ALQKEQEFQL AMEQLKKEQQ AAQKAQETES ILTADVSPFS TQDKAKLERR 480
  481 KSSRPLSEGT GEDKPAKLDP IEGIKQTHSL LVRTLSLRAR RESAVSIFNF RPVNKDSELD 540
  541 FADDEFSNHG DSDSRGGALA LPWSRRRTSA QSSCSHSSQF FFPSFNINGK LMVAVEQNGI 600
  601 SSQGPLTPMT PLTPLPACTM EKLKEESGQN SSNELSSMLL PQLPPEGRDR ALSATSYITD 660
  661 AMEELEEAQQ KCHPCWYVFA HKYLVWTCSP RWLKVKEWVK IMVMDPFLDL AITICIVLNT 720
  721 LFMALEHYPM TDEFNRMLSV GNLVFTGIFT AEMVLKIIAL DPYYYFQQGW NIFDSLIVSL 780
  781 SLMELGLSNV EGLSVLRSFR LLRVFKLAKS WPTLNTLIKI IGNSVGALGN LTLVLAIIVF 840
  841 IFAVVGMQLF GKNYDLCVCK ISKDCTLPRW HMKDFFHSFL IVFRVLCGEW IETMWDCMEV 900
  901 AGQPLCILVF MLVMVIGNLV VLNLFLALLL SSFSADNLSA PDEDGEMNNL QIAIARIQRG 960
  961 MLWLRQALCD FFNGNFKRRR QKAKEAKAML KLKRLTQQAH WAEGNGTAGV IERSSGAGSG1020
 1021 EDDSYMTNPN LTISVPIAPG ESDVEFPEEE DEEEDEEEEA SASSDEEPEP CKPRDDTSLS1080
 1081 EGSTIDLRKP GEEEDEYSEM AEEAMDPENC FPDVCVRHFK CCDINTSEGL GRAWWRLRKT1140
 1141 CYQIVEHSWF ETFIIFMILL SSGALAFEDI YIDQRKVVKV ILEYADKIFT YIFILEMSLK1200
 1201 WIAYGFRKYF TNYWCWLDFL IVDVSLVSLV ANTLGYSDFA AIKSLRTLRA LRPLRALSRF1260
 1261 EGMRVVVNAL IGAIPSIMNV LLVCLIFWLI FSIMGVNLFA GKFGRCVNRT GFIYNSSDIN1320
 1321 NRSECLEMNS TQYYWTKVKV NFDNVGAGYL ALLQVATFKG WMEIMYAAVD SRAVEEQPIK1380
 1381 ENSLYMYLYF VIFIIFGSFF TLNLFIGVII DNFNQQKRKL GGQDIFMTEE QKKYYNAMKK1440
 1441 LGSKKPQKPI PRPPNPVQGF FFDLVSKQAF DILIMLLIIL NMVTMMVETD EQSPSIKHIL1500
 1501 DCINLVFIVI FTSECILKII ALRCYFFTVS WNIFDFVVVI LSIVGIVLAD IIEKYFVSPT1560
 1561 LFRVIRLARI GRILRLIRGA KGIRTLLFAL MMSLPALFNI GLLLFLVMFI YAIFGMANFA1620
 1621 YVKKQGGIDD MFNFETFGNS MICLFQITTS AGWDNLLSPI LNTPPEECDP EIPHTGTNAR1680
 1681 GNCGKPSVGI TFFVTYIIIS FLIVVNMYIA IILENFSVAT EESTEPLSED DFEMFYEVWE1740
 1741 KFDPEATQFI EYLKLSDFAD TLSEPLRIGK PNKIKLISMD LPMVSGDKIH CLDILFAFTK1800
 1801 RVLGESGEMD ALKQQMEEKF MMANPSKISY EPITTTLRRK QEEVSAIMIQ RSYRRHLIRR1860
 1861 QLKQASLLYR QMTMPDADKA GDSSPESQGL IVSMIMENYA TEAEITISAT SSPPSYDSVT1920
 1921 RATSEIFHAL IPEETNEILS EHLADAEKES ETFL