YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76786321, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.87
Transmembrane Helix	125	149	0.87
Non-Cytoplasmic	150	193	0.78
Transmembrane Helix	194	213	0.72
Cytoplasmic	214	223	0.71
Transmembrane Helix	224	243	0.82
Non-Cytoplasmic	244	250	0.76
Transmembrane Helix	251	272	0.94
Cytoplasmic	273	390	0.80
Transmembrane Helix	391	416	0.87
Non-Cytoplasmic	417	701	0.52
Transmembrane Helix	702	724	0.78
Cytoplasmic	725	736	0.48
Transmembrane Helix	737	759	0.75
Non-Cytoplasmic	760	770	0.69
Transmembrane Helix	771	795	0.75
Cytoplasmic	796	818	0.72
Transmembrane Helix	819	844	0.84
Non-Cytoplasmic	845	873	0.76
Transmembrane Helix	874	893	0.67
Cytoplasmic	894	903	0.68
Transmembrane Helix	904	928	0.90
Non-Cytoplasmic	929	952	0.75
Transmembrane Helix	953	971	0.40
Cytoplasmic	972	1126	0.60
Transmembrane Helix	1127	1147	0.80
Non-Cytoplasmic	1148	1198	0.49
Transmembrane Helix	1199	1222	0.76
Cytoplasmic	1223	1244	0.65
Transmembrane Helix	1245	1271	0.84
Non-Cytoplasmic	1272	1324	0.52
Transmembrane Helix	1325	1342	0.41
Cytoplasmic	1343	1365	0.77
Transmembrane Helix	1366	1389	0.89
Non-Cytoplasmic	1390	1447	0.84
Transmembrane Helix	1448	1467	0.87
Cytoplasmic	1468	1479	0.83
Transmembrane Helix	1480	1502	0.87
Non-Cytoplasmic	1503	1512	0.68
Transmembrane Helix	1513	1536	0.84
Cytoplasmic	1537	1556	0.80
Transmembrane Helix	1557	1578	0.69
Non-Cytoplasmic	1579	1579	0.49
Transmembrane Helix	1580	1602	0.79
Cytoplasmic	1603	1615	0.59
Transmembrane Helix	1616	1633	0.52
Non-Cytoplasmic	1634	1667	0.50
Transmembrane Helix	1668	1692	0.85
Cytoplasmic	1693	1932	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMLLPAGP DGLRPFTRES LAAIEQRISE ERARNTKDYK ADPGDVEEPK PRADLEVGKV  60
   61 LPRIFGEIPA GLVGVPLEDI DPFYFRNQKT FIVLNKGKAI FRFSATSALY IFSPFHCIRR 120
  121 ISIRILVHSL FSLFIMCTIL TNCCFMAMSD PPLWTKYLEY TFTGIYTFES LIKILARGFC 180
  181 TECFTFLRDP WNWLDFSVIV MAYVTEFVDL GNVSALRTFR VLRALKTISV IPGLKTIVGA 240
  241 LIQSVKKLAD VMILTVFCLS VFALIGLQLF MGILRQKCVR SIGHCVNSTY PGNGSFVCNN 300
  301 KTWLSVKDFL TNEDNFYKIE GSKDALICGY SSDAGKCPDG FDCLKTSRNP NYGYTSFDTF 360
  361 GWAFLGLFRL MTQDYWESLY HQTLRSAGKT YMIFFVLVIF LGSFYLVNLI LAVVAMAYEE 420
  421 QNQATIAEAW AKEREFQLAM EHLRKEQRAL AKQRRKEAEM ALAADFCPSP FSRKDSIKCR 480
  481 TRTRSHRTLS EEIEDSFLPK FEPLDEKPAH PLLATLSSHP LSTRRGSQMS IFTFRPRNSS 540
  541 EADFADDEHS VADYGRSRAG SMATPWHKHR TGSIRSHSSQ VFTPTLANGR LNISLEQNGI 600
  601 TGIGLHTPTT GPKFSMEKVK EGTEPECQNE QVKLTVDVQE EVLPPRRKRG LSSVSFFSDA 660
  661 MDELEEARQK CPPCWYEFAQ KYLIWTCSPA WLRVKEGLKV MVMDPFLDLA ITICIVLNTL 720
  721 FMALEHYPMT DEFNSMLSIG NLVFTGIFTA EMVLKIFALD PYYYFQQGWN IFDGIIVCLS 780
  781 LMELGLSNVE GLSVLRSFRL LRVFKLAKSW PTLNTLIKII GNSVGALGNL TLVLAIIVFI 840
  841 FAVVGMQLFG KNYQDCVCKI SYDCTLPRWH MKDFFHSFLI VFRVLCGEWI ETMWDCMEVA 900
  901 GQPLCILVFM LVMVIGNLVV LNLFLALLLS SFSSDNLSAP DEDGEMNNLQ IAIARIHCGF 960
  961 SWLLNGIKDL FSGNLTRHRR KSKEAQVTLN HTECNGGLGS LEKYVFPETE DSYMTNPNLT1020
 1021 ICVPIAPGES DVEFLEEEEE EEDTESSEDE EEKQEVISLS EGSTVDLRKP GEDEEEYSEM1080
 1081 ADDGMDPEEC FPEFCMQRCK CCNINTTQGL GQMWWRLRKT CYQIVEHSWF ETFIILMILL1140
 1141 SSGALAFEDI YIEQRKVVKV VLEYADKVFS YIFVLEMFLK WIAYGFKKYF TNYWCWLDFL1200
 1201 IVDVSLISLV ANSLGYSDFG AIKSLRTLRA LRPLRALSRF EGMRVVVNAL IGAIPSIMNV1260
 1261 LLVCLIFWLI FSIMGVNLFA GKFGKCVNRT GFIHNASIVN NKTECLSMND TQFYWTKVKV1320
 1321 NFDNVGLGYL SLLQVATFKG WMEIMYAAVD SRGVEDQPIK EINLYMYLYF VIFIIFGSFF1380
 1381 TLNLFIGVII DNFNQQKRMI GGQDIFMTEE QKKYYNAMKK LGSKKPQKPI PRPMNILQGF1440
 1441 FFDLVSKQAF DITIMMLIIL NMITMMVETD EQSARMETIL NNINLAFIVI FTTECLIKIF1500
 1501 ALRCYFFTIS WNIFDFVVVI LSIVGIVLAD IIEKYFVSPT LFRVIRLARI GRVLRLIRAA1560
 1561 KGIRTLLFAL MMSLPALFNI GLLLFLVMFI YAIFGMANFA YVKKQGGIDD MFNFETFGNS1620
 1621 MICLFQITTS AGWNNLLDPI LNNSPEECSS SFANTGTNTK GNCGHPSVGI TFFVSYIIIS1680
 1681 FLIVVNMYIA IILENFSVAT EESTEPLSED DFEMFYEVWE KFDVEATHFI EYAKLSNFAD1740
 1741 SLSEPLRIAK PNKIKLIHMD LPMVNGDRIH CLDILFAFTK RVLGETGEMD ALKQQMEEKF1800
 1801 MVTNPSKISH EPITTTLRRK QEEISATLIQ RAYRAHLIRR QMKQASYLYR HINQETPWSE1860
 1861 EDSAPEQEGL IASMIKENYG PEKMVGTLCY ASSPPSYEAV TRSPRDHFKL LISDSRSNEP1920
 1921 HKSEETYEET FL