YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113676373, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	125	0.96
Transmembrane Helix	126	149	0.89
Non-Cytoplasmic	150	193	0.89
Transmembrane Helix	194	214	0.82
Cytoplasmic	215	224	0.72
Transmembrane Helix	225	244	0.84
Non-Cytoplasmic	245	251	0.78
Transmembrane Helix	252	273	0.93
Cytoplasmic	274	391	0.87
Transmembrane Helix	392	416	0.90
Non-Cytoplasmic	417	737	0.73
Transmembrane Helix	738	761	0.81
Cytoplasmic	762	772	0.62
Transmembrane Helix	773	795	0.77
Non-Cytoplasmic	796	810	0.78
Transmembrane Helix	811	832	0.84
Cytoplasmic	833	855	0.77
Transmembrane Helix	856	880	0.88
Non-Cytoplasmic	881	911	0.82
Transmembrane Helix	912	931	0.69
Cytoplasmic	932	941	0.70
Transmembrane Helix	942	964	0.92
Non-Cytoplasmic	965	1199	0.84
Transmembrane Helix	1200	1223	0.78
Cytoplasmic	1224	1238	0.81
Transmembrane Helix	1239	1258	0.80
Non-Cytoplasmic	1259	1269	0.73
Transmembrane Helix	1270	1290	0.84
Cytoplasmic	1291	1315	0.82
Transmembrane Helix	1316	1342	0.88
Non-Cytoplasmic	1343	1440	0.83
Transmembrane Helix	1441	1464	0.91
Cytoplasmic	1465	1522	0.87
Transmembrane Helix	1523	1541	0.89
Non-Cytoplasmic	1542	1552	0.81
Transmembrane Helix	1553	1574	0.90
Cytoplasmic	1575	1581	0.71
Transmembrane Helix	1582	1603	0.89
Non-Cytoplasmic	1604	1647	0.67
Transmembrane Helix	1648	1669	0.87
Cytoplasmic	1670	1741	0.50
Transmembrane Helix	1742	1766	0.88
Non-Cytoplasmic	1767	1996	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQLLVPPG PDSFRPFLPE SLAAIEQRIA EEVAQRPKGE RRPDDDDENG PKPNRDLEAG  60
   61 KPLPFIYGDV PPHMLSVPLE DLDTYYSNQK TFIVLNRGKA IFRFNATPAL YILSPFNPLR 120
  121 RISIRVLVHS LFSFVIMCTI LTNCAFMTLS NPPEWAKNVE YTFTGIYTFE SLIKILARGF 180
  181 CVGKFTFLRD PWNWLDFSVI LMAYVTEFVN LGNVSALRTF RVLRALKTIS VIPGLKTIVG 240
  241 ALIQSVKKLS DVMILTVFCL SVFALIGLQL FMGNLRQKCV KMPEVNVTDN LTDYSTELHN 300
  301 STFNWTEYIS DSNNYYFIPG RRDALLCGNS SDAGQCPEGF TCIKAGRNPD YGYTSFDTFS 360
  361 WAFLSLFRLM TQDFWENLYQ QTLRAAGKPY MIFFVLVIFL GSFYLVNLIL AVVAMAYDEQ 420
  421 NQATIEEAQQ KEEEFQAMLE QLKRQQEEAQ VAAAAATESG EYSGRGGLSE ESSSGGSRLS 480
  481 SKSAKERRNR RKKRKQREEE EKADQEKFHK SASEDSIRRP GFRFSIDANR LSYEKKCSTP 540
  541 NQSLLSIRGS LFSPRRNSRA SLFSFRGRAR DFGSENDFAD DEHSTFEDSD SRRGSLFVPR 600
  601 CVERRSSTVS HCSLTAPRIM LPANGKMHCT VDCNGVVSLV GGTSVPTSPI GRLLPEGTTT 660
  661 ESDVRKKRSG SHQPSDYLEE TVARKRAMSV ASILTNTMEE LEESRQKCPP CWYKFANSFL 720
  721 IWDCSPAWLK VKEIMNMIVM DPFVDLAITI CIVLNTLFMA MEHYPMTTQF SHLLSVGNLV 780
  781 FTGIFTAEMC LKVIALDPYY YFQEGWNIFD GIIVSLSLME LGLANVEGLS VLRSFRLLRV 840
  841 FKLAKSWPTL NMLIKIIGNS VGALGNLTLV LAIIVFIFAV VGMQLFGKSY RECVCKISES 900
  901 CELPRWHMDD FFHSFLIVFR VLCGEWIETM WDCMEVAGQS MCLIVFMMVM VIGNLVVLNL 960
  961 FLALLLSSFS ADNLAATDDD SEMNNLQIAV GRIQKGIALV KSTLRQFLQS LFLAGSKPRS1020
 1021 LNEEKPLDDL HSDGKENCLS NHAPVAVDLT KDYLKEGCVS PGNGVESHVK YGIEEGDYMS1080
 1081 FIHNPSLTVT VPIAVGESDF ENLNTEDFSS ESSDVEGSKE KLPVDTVLSS SEGSTVDIRP1140
 1141 PGEGAESVEL EPEESLDPEA CFTEGCVMRF QCCQVDVEKG KWKSWWILRK TCFIIVEHNW1200
 1201 FESFIIFMIL LSSGALAFED IYIEQRKTIK TVLEYADKVF TYIFILEMLL KWVAYGFAKY1260
 1261 FTNAWCWLDF LIVDVSLVSL VANALGYSEL SAIKSLRTLR ALRPLRALSR FEGMRVVVNA1320
 1321 LLGAIPSIMN VLLVCLIFWL IFSIMGVNLF AGKYYYCVNI TNDELFPVSV VNNKSDCYAL1380
 1381 IQNNDTARWK NVKINFDNVG AGYLALLQVA TFKGWMDIMY AAVDSRDLEQ QPVYETNLYM1440
 1441 YLYFVIFIIF GSFFTLNLFI GVIIDNFNQQ KKKLGGQDIF MTEEQKKYYN AMKKLGSKKP1500
 1501 QKPIPRPANK FQGLVFDLIT KQAFDIIIMI LICLNMVTMM VETDDQTEDM DNILYWINLV1560
 1561 FIILFTGECV LKMISLRHYF FTIGWNVFDF VVVILSIVGM FLSEMIEKYF VSPTLFRVIR1620
 1621 LARIGRILRL IKGAKGIRTL LFALMMSLPA LFNIGLLLFL VMFIYAIFGM SNLAYVKREA1680
 1681 GIDDMFNFET FGNSMLCLFQ ITTSAGWDGL LAPILNKQDP DCDSEMEHPG SFYRGNCGNP1740
 1741 SVGIFFFVSY IIICFLIVVN MYIAVILENF SVATEESAEP LSEDDFEMFY EVWERFDPNA1800
 1801 TQFVEYNKLS DFAVFLDPPL RIAKPNKIQL IAMDLPMVSG DRIHCLDILF AFTLRVLGEE1860
 1861 GEMDALRGQM EDRFMASNPS KVSYEPITTT LRRKQEEMSA VVIQRAFRRH RIRQTVKKAS1920
 1921 EAYRKQLQDG GGHIPEKEVL VIGKFQENSA SDKTDMTPSS ASPPSYNSVA KSEKDKYEKE1980
 1981 RREKEDKAKD ARDRKK