YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMR279C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.72
Transmembrane Helix	70	88	0.61
Non-Cytoplasmic	89	108	0.82
Transmembrane Helix	109	129	0.89
Cytoplasmic	130	138	0.77
Transmembrane Helix	139	158	0.91
Non-Cytoplasmic	159	169	0.84
Transmembrane Helix	170	191	0.90
Cytoplasmic	192	199	0.88
Transmembrane Helix	200	224	0.91
Non-Cytoplasmic	225	232	0.87
Transmembrane Helix	233	253	0.95
Cytoplasmic	254	263	0.88
Transmembrane Helix	264	285	0.89
Non-Cytoplasmic	286	295	0.83
Transmembrane Helix	296	315	0.96
Cytoplasmic	316	334	0.94
Transmembrane Helix	335	356	0.94
Non-Cytoplasmic	357	370	0.87
Transmembrane Helix	371	391	0.93
Cytoplasmic	392	399	0.77
Transmembrane Helix	400	419	0.95
Non-Cytoplasmic	420	429	0.81
Transmembrane Helix	430	451	0.88
Cytoplasmic	452	463	0.74
Transmembrane Helix	464	485	0.84
Non-Cytoplasmic	486	501	0.87
Transmembrane Helix	502	523	0.94
Cytoplasmic	524	540	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSIFKKKTS VQGTDSEIDE KITVKAKDKV VVSTEDEEVT TIVSSTKSTQ VTNDSPWQDP  60
   61 TYFSSFGKEL MFIATCMLAQ LLNQAGQTHA LCIMNVLSKS FNSEANNQAW LMASFPLAAG 120
  121 SFILISGRLG DIYGLKKMLI VGYVIVIVWS IISGLSKYSN SDAFFITSRA FQGVGIAFIL 180
  181 PNIMGLVGHV YKVGSFRKNI VISFIGACAP TGGMFGGLFG GLIVTEDPNQ WPWVFYAFGI 240
  241 ATFLSLLMAW YSIPNNVPTN IHGLSMDWTG SALAIIGLIL FNFVWNQAPI VGWDKPYIIV 300
  301 LLIISVIFLV AFFVYESKYA EVPLLPRAMT KNRHMIMILL AVFLGWGSFG IWTFYYVSFQ 360
  361 LNLRHYSPVW TGGTYFVFVI FGSMAAFFVA FSIKRLGPAL LLCFSLMAFD AGSIMFSVLP 420
  421 VEQSYWKLNF AMQAILCFGM DLSFPASSII LSDGLPMQYQ GMAGSLVNTV INYSASLCLG 480
  481 MGGTVEHQIN KSGNDLLKGY RAAVYLGVGL ASLGVVISVT YMLENLWNRH RKSEDRSLEA 540
  541